Query= MSMg01no396_a12.b1 MSMg01no396_a12.b1 CHROMAT_FILE:
MSMg01no396_a12.b1 PHD_FILE: MSMg01no396_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:03 2005
(467 letters)
>mm_chr19_55044817_55045686
Length = 870
Score = 795 bits (411), Expect = 0.0
Identities = 452/469 (96%), Gaps = 10/469 (2%)
Strand = Plus / Minus
Query: 6 gaattctgcttt----tttccaacctggaagcttacatgagatgcggattctaggatccc 61
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gaattctgctttaaaat---caacctggaagcttacatgagatgcggattctaggatccc 631
Query: 62 cacatttcttccctttctctttctaggatggcaataaagaaatactaggtctaaaatcca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 cacatttcttccctttctctttctaggatggcaataaagaaatactaggtctaaaatcca 571
Query: 122 caaatgatctgtgtcaccctcatgcccattcccttgtggttgggaggcagataatctccc 181
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 caaatgatctgtgtcatcctcatgcccattcccttgtggttgggaggcagataatctccc 511
Query: 182 ctggagaattgctgctcggttagacactgaaatccttagcagttttgcctccttaggaag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ctggagaattgctgctcggttagacactgaaatccttagcagttttgcctccttaggaag 451
Query: 242 taaagtctaagaaataataagagaacatcccatgaattgtgaa-ctaccctcggagtctc 300
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||
Sbjct: 450 taaagtctaagaaataataagagaacatcccatgaattgtgaacctacccccggagtgtc 391
Query: 301 tgatcttccagcacaagctgtgaacagttgagaagg-aaagggagaaggtgctgactagt 359
||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 390 tgatcctccagcacaagctgtgagcagttgagaaggaaaagggagaaggtgctgactagt 331
Query: 360 tacaatatcctcctacttactaataaggatgaatttata-aaaaaaaaagcaacgttgat 418
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 330 tacaatatcctcctacttactaataaggatgaatttatacaaaagaaaagcaacgttgat 271
Query: 419 agcccaataatccactgaccattcctccagaaacagccagcctgtcctc 467
|||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 270 agcccaataatccactgaccattcctccagaaacggccagcctgtcctc 222
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 870
Length adjustment: 10
Effective length of query: 457
Effective length of database: 860
Effective search space: 393020
Effective search space used: 393020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no396_a12.g1 MSMg01no396_a12.g1 CHROMAT_FILE:
MSMg01no396_a12.g1 PHD_FILE: MSMg01no396_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:03 2005
(310 letters)
>mm_chr19_54930274_54930983
Length = 710
Score = 559 bits (289), Expect = e-164
Identities = 304/309 (98%)
Strand = Plus / Plus
Query: 1 catataagtgggggcaggtgctggcagtgaattccatataagtgggggtaggtgctggct 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 catataagtgggggcaggtgctggcagtgaattccatataagtgggggcaggtgctggct 260
Query: 61 gtgaattccatataagtggaaccagttgctctgaactctgtaaaacaaggacagatacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgaattccatataagtggaaccagttgctctgaactctgtaaaacaaggacagatacag 320
Query: 121 attccaccagaggaattgtgatgcaaatcgaaggagagcgctcagtgcatagtggtgcta 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 attccaccagaggaattgtgatgcaaatcgaaggagagcactcagtgcatagtggtgcta 380
Query: 181 cgatgagctatgagaagtagtgatcttagcatgcataaggccacgtgatgcagaaattca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgatgagctatgagaagtagtgatcttagcatgcataaggccacgtgatgcagaaattca 440
Query: 241 taaatcttatttttaaccagaattgaacacctattgttattctgtctttcatctttctgt 300
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaatcataactttaaccagaattgaacacctattgttattctgtctttcatctttctgt 500
Query: 301 tctgggatt 309
|||||||||
Sbjct: 501 tctgggatt 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space: 211001
Effective search space used: 211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
