Query= MSMg01no396_f11.b1 MSMg01no396_f11.b1 CHROMAT_FILE:
MSMg01no396_f11.b1 PHD_FILE: MSMg01no396_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:26 2005
(435 letters)
>mm_chr19_32697281_32698116
Length = 836
Score = 675 bits (349), Expect = 0.0
Identities = 409/439 (93%), Gaps = 21/439 (4%)
Strand = Plus / Plus
Query: 1 tgctgtttccgtggctggagagagcc-caaatactaggcatttaggtatctaaagataca 59
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 tgctgtttccgtggctggagagagccacaaatactaggcatttaggtatctaaagataca 260
Query: 60 gatttggggtttctagcaccctggtggtaggcaaagtctggggaacatgtgagatcactg 119
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatttgggttttctagcaccctggtggtaggcaaagtctggggaacatgtgagatcactg 320
Query: 120 agtgcccactggaagttctgcggaaaccaggacaaagagatccctgctatagaagaggtt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgcccactggaagttctgcggaaaccaggacaaagagatccctgctatagaagaggtt 380
Query: 180 gggtgtcttatcaacaacagaaatcaaatcagatctgcactaaggagccctttctgggat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtgtcttatcaacaacagaaatcaaatcagatctgcactaaggagccctttctgggat 440
Query: 240 ccagaaacttgttttccacaggcaggattaggtagtgacaggtaagagaaaggtggaagt 299
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccggaaacttggactccacaggcaggattaggtagtgacaggtaagagaaaggtggaagt 500
Query: 300 gacagcaggtaggtgccccacaggtctggccttaataacggtccagccccagatactgtg 359
|||||||||||||||||||||||||||| |||| |||| | |||| |
Sbjct: 501 gacagcaggtaggtgccccacaggtctgacctt--taac-----a----caga------g 543
Query: 360 g---tgattaaggtacaccctgcatttgaactaccagaactggaggtagccttttaagca 416
| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gccttgattagggaacaccctgcatttgaactaccagaactggaggtagccttttaagca 603
Query: 417 ttagcgaaagcctctcaaa 435
|||| ||||||||||||||
Sbjct: 604 ttagtgaaagcctctcaaa 622
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 836
Length adjustment: 9
Effective length of query: 426
Effective length of database: 827
Effective search space: 352302
Effective search space used: 352302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no396_f11.g1 MSMg01no396_f11.g1 CHROMAT_FILE:
MSMg01no396_f11.g1 PHD_FILE: MSMg01no396_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:26 2005
(426 letters)
>mm_chr19_32883899_32884724
Length = 826
Score = 785 bits (406), Expect = 0.0
Identities = 421/430 (97%), Gaps = 8/430 (1%)
Strand = Plus / Minus
Query: 1 aggaggaagaaagaagctggtggatctctgtgcattccaagccaacagggctacaaagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aggaggaagaaagaagctggtggatctctgtgcattccaagccaacagggctacaaagag 444
Query: 61 agaccccgtctcaaaaacaaaaacaaacaaacaaaaatggatataaaccacttgaaatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agaccccgtctcaaaaacaaaaacaaacaaacaaaaatggatataaaccacttgaaatca 384
Query: 121 tgattggcaatttaagactttggctagagtgaaaaatcacatactaaatagtcaaagctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgattggcaatttaagactttggctagagtgaaaaatcacatactaaatagtcaaagctt 324
Query: 181 atatttgaattctgagaaaatataaacttccaatttgcttctttaaaaaaattaatacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atatttgaattctgagaaaatataaacttccaatttgcttctttaaaaaaattaatacaa 264
Query: 241 taat----attttcctccttaatagaatttacatgaggataaaccagcaaattcagttat 296
|||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 taatacaaa----cctccttaatagaatttacatgaggataaaccagcaaattcagttat 208
Query: 297 acaaaagaagttaaaataaacaaaaaaatatagtagctgataatgttcagatggcatttc 356
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ataaaagaagttaaaataaacaaaaaaatatagtagctgataatgttcagatggcatttc 148
Query: 357 tcctgctctctagcttttggtacacatttcacacttgtgtacagcaataaacagattctc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 tcctgctctctagcttttggtacacatttcacacttgtgtacagcaataaacagattctc 88
Query: 417 aagtgatggg 426
||||||||||
Sbjct: 87 aagtgatggg 78
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space: 340689
Effective search space used: 340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|