BAC Information

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BAC

Clone NameMSMg01-396F11
Chromosome19 (Build37)
Map Location 32,697,481 - 32,884,401
singlet/doubletdoublet
Overlap genePapss2, Atad1, Pten, B430203M17Rik
Upstream genePrkg1, 1810073H04Rik, Asah2, EG668042, Sgms1, 2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1
Downstream gene6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396F11.T7 (MSMg01no396_f11.b1)MSMg01-396F11.TJ (MSMg01no396_f11.g1)
ACCAG496942AG496943
length775757
length of high quality
(start - end)
435 (56 - 490)426 (66 - 491)
definitionCHROMAT_FILE: MSMg01no396_f11.b1 PHD_FILE: MSMg01no396_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:26 2005CHROMAT_FILE: MSMg01no396_f11.g1 PHD_FILE: MSMg01no396_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,697,481 - 32,697,902)(32,883,976 - 32,884,401)
sequence
GCCGCCGCTATACGACTCACTATTCCCAGAGATCCGCGGAATTCCATCAT
CTCTGTGCTGTTTCCGTGGCTGGAGAGAGCCCAAATACTAGGCATTTAGG
TATCTAAAGATACAGATTTGGGGTTTCTAGCACCCTGGTGGTAGGCAAAG
TCTGGGGAACATGTGAGATCACTGAGTGCCCACTGGAAGTTCTGCGGAAA
CCAGGACAAAGAGATCCCTGCTATAGAAGAGGTTGGGTGTCTTATCAACA
ACAGAAATCAAATCAGATCTGCACTAAGGAGCCCTTTCTGGGATCCAGAA
ACTTGTTTTCCACAGGCAGGATTAGGTAGTGACAGGTAAGAGAAAGGTGG
AAGTGACAGCAGGTAGGTGCCCCACAGGTCTGGCCTTAATAACGGTCCAG
CCCCAGATACTGTGGTGATTAAGGTACACCCTGCATTTGAACTACCAGAA
CTGGAGGTAGCCTTTTAAGCATTAGCGAAAGCCTCTCAAAGCCTAGCCTG
AGGAAATGTAACATGGTTGCAGATGGGATCCGTGTGTTGTTGACACAGAA
ACTGATTGATGCCCCTACCCTTCCCTCCTTAACGAATAACTTGCATAACC
TTGAGGTACTGGGAAAAACCCTTGGGGCTTTTTGCTGTCTTCGTGCCCTT
TCCTATCGATTTTGTTGTCCCCCTCTTTTTTTTTGGTACTATATTTGTTT
TCCATTTCCGCTCCTCCCATATCATATATTTCTCTCTCGTACTTTTCTTG
TTTATTTTGTTTCCTCTTTTTTCTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGGAGGAAGAAAGAAGCTGGTGGATCTCTGTGCAT
TCCAAGCCAACAGGGCTACAAAGAGAGACCCCGTCTCAAAAACAAAAACA
AACAAACAAAAATGGATATAAACCACTTGAAATCATGATTGGCAATTTAA
GACTTTGGCTAGAGTGAAAAATCACATACTAAATAGTCAAAGCTTATATT
TGAATTCTGAGAAAATATAAACTTCCAATTTGCTTCTTTAAAAAAATTAA
TACAATAATATTTTCCTCCTTAATAGAATTTACATGAGGATAAACCAGCA
AATTCAGTTATACAAAAGAAGTTAAAATAAACAAAAAAATATAGTAGCTG
ATAATGTTCAGATGGCATTTCTCCTGCTCTCTAGCTTTTGGTACACATTT
CACACTTGTGTACAGCAATAAACAGATTCTCAAGTGATGGGAAGGACACT
TATTATCACAAGCATTTATATGCTCATCCTTTTGAAAAAAGCTGGGTTGA
TATGTTAGTAAACAATTCTCAGATCAACAGTAGCTGTGGGAATAGAGCTC
ATAGAGCTCTTCGGCCGTGTTGACACCGATTTAAGCTTGCTCCTTACTAA
TGCCCTACCCTTCTACGTCAAAACTTAACTACCATATCCCCCTTAGGACC
TTAACTGCCCTACCTAAAACCAAAACCATGCGCTTCCTTTAATCTCTCCT
TTGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_f11.b1 MSMg01no396_f11.b1 CHROMAT_FILE:
MSMg01no396_f11.b1 PHD_FILE: MSMg01no396_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:26 2005
         (435 letters)



>mm_chr19_32697281_32698116
          Length = 836

 Score =  675 bits (349), Expect = 0.0
 Identities = 409/439 (93%), Gaps = 21/439 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctgtttccgtggctggagagagcc-caaatactaggcatttaggtatctaaagataca 59
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 tgctgtttccgtggctggagagagccacaaatactaggcatttaggtatctaaagataca 260

                                                                       
Query: 60  gatttggggtttctagcaccctggtggtaggcaaagtctggggaacatgtgagatcactg 119
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatttgggttttctagcaccctggtggtaggcaaagtctggggaacatgtgagatcactg 320

                                                                       
Query: 120 agtgcccactggaagttctgcggaaaccaggacaaagagatccctgctatagaagaggtt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgcccactggaagttctgcggaaaccaggacaaagagatccctgctatagaagaggtt 380

                                                                       
Query: 180 gggtgtcttatcaacaacagaaatcaaatcagatctgcactaaggagccctttctgggat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtgtcttatcaacaacagaaatcaaatcagatctgcactaaggagccctttctgggat 440

                                                                       
Query: 240 ccagaaacttgttttccacaggcaggattaggtagtgacaggtaagagaaaggtggaagt 299
           || ||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccggaaacttggactccacaggcaggattaggtagtgacaggtaagagaaaggtggaagt 500

                                                                       
Query: 300 gacagcaggtaggtgccccacaggtctggccttaataacggtccagccccagatactgtg 359
           |||||||||||||||||||||||||||| ||||  ||||     |    ||||      |
Sbjct: 501 gacagcaggtaggtgccccacaggtctgacctt--taac-----a----caga------g 543

                                                                       
Query: 360 g---tgattaaggtacaccctgcatttgaactaccagaactggaggtagccttttaagca 416
           |   |||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gccttgattagggaacaccctgcatttgaactaccagaactggaggtagccttttaagca 603

                              
Query: 417 ttagcgaaagcctctcaaa 435
           |||| ||||||||||||||
Sbjct: 604 ttagtgaaagcctctcaaa 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 836
Length adjustment: 9
Effective length of query: 426
Effective length of database: 827
Effective search space:   352302
Effective search space used:   352302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no396_f11.g1 MSMg01no396_f11.g1 CHROMAT_FILE:
MSMg01no396_f11.g1 PHD_FILE: MSMg01no396_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:26 2005
         (426 letters)



>mm_chr19_32883899_32884724
          Length = 826

 Score =  785 bits (406), Expect = 0.0
 Identities = 421/430 (97%), Gaps = 8/430 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaggaagaaagaagctggtggatctctgtgcattccaagccaacagggctacaaagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aggaggaagaaagaagctggtggatctctgtgcattccaagccaacagggctacaaagag 444

                                                                       
Query: 61  agaccccgtctcaaaaacaaaaacaaacaaacaaaaatggatataaaccacttgaaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agaccccgtctcaaaaacaaaaacaaacaaacaaaaatggatataaaccacttgaaatca 384

                                                                       
Query: 121 tgattggcaatttaagactttggctagagtgaaaaatcacatactaaatagtcaaagctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgattggcaatttaagactttggctagagtgaaaaatcacatactaaatagtcaaagctt 324

                                                                       
Query: 181 atatttgaattctgagaaaatataaacttccaatttgcttctttaaaaaaattaatacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atatttgaattctgagaaaatataaacttccaatttgcttctttaaaaaaattaatacaa 264

                                                                       
Query: 241 taat----attttcctccttaatagaatttacatgaggataaaccagcaaattcagttat 296
           ||||    |    |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 taatacaaa----cctccttaatagaatttacatgaggataaaccagcaaattcagttat 208

                                                                       
Query: 297 acaaaagaagttaaaataaacaaaaaaatatagtagctgataatgttcagatggcatttc 356
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ataaaagaagttaaaataaacaaaaaaatatagtagctgataatgttcagatggcatttc 148

                                                                       
Query: 357 tcctgctctctagcttttggtacacatttcacacttgtgtacagcaataaacagattctc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 tcctgctctctagcttttggtacacatttcacacttgtgtacagcaataaacagattctc 88

                     
Query: 417 aagtgatggg 426
           ||||||||||
Sbjct: 87  aagtgatggg 78


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)