Query= MSMg01no398_a02.b1 MSMg01no398_a02.b1 CHROMAT_FILE:
MSMg01no398_a02.b1 PHD_FILE: MSMg01no398_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:37 2005
(580 letters)
>mm_chr19_59153515_59154494
Length = 980
Score = 806 bits (417), Expect = 0.0
Identities = 423/425 (99%)
Strand = Plus / Minus
Query: 5 gaattccaggacagtctggacagctatacagagaaaccatatctcaaaaaaaaaaaatta 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gaattccaggacagcctggacagctatacagagaaaccatatctcaaaaaaaaaaaatta 366
Query: 65 agagctttattgaattgtattttacccaccatgttacatggatgctaacaagggatatag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agagctttattgaattgtattttacccaccatgttacatggatgctaacaagggatatag 306
Query: 125 gtaacatcatcaatgaagataaccaaagacttttctaaatgggcagaatgtacaattcta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gtaacatcatcaatgaagataaccaaagacttttctaaatgggcagaatgtacaattcta 246
Query: 185 gttttgaggatatccatagttatgcaatctgaaatacaatgtattttagtttattccccc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gttttgaggatatccatagttatgcaatctgaaatacaatgtattttagtttattccccc 186
Query: 245 acctccaatgcacatgctttttaggagtcattgcctatattttctttctccccatcccca 304
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 185 acctccaatgcacatgctttttaggagtcattgcctatattttctttctccctatcccca 126
Query: 305 gttctatacaaatcattagtcaactttctttatgtgtttgtttgttgtgagcattttata 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gttctatacaaatcattagtcaactttctttatgtgtttgtttgttgtgagcattttata 66
Query: 365 taaaggcaatcgtgcagtagttcgggtttttctgactgccttcttgcacttagaatcatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 taaaggcaatcgtgcagtagttcgggtttttctgactgccttcttgcacttagaatcatg 6
Query: 425 ttttt 429
|||||
Sbjct: 5 ttttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no398_a02.g1 MSMg01no398_a02.g1 CHROMAT_FILE:
MSMg01no398_a02.g1 PHD_FILE: MSMg01no398_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:37 2005
(380 letters)
>mm_chr19_58930007_58930786
Length = 780
Score = 667 bits (345), Expect = 0.0
Identities = 370/383 (96%), Gaps = 8/383 (2%)
Strand = Plus / Plus
Query: 1 cttcagtaagtgataaagtcatttccttcccatccctttatctctgtctgtttccaacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcagtaagtgataaagtcatttccttcccatccctttatctctgtctgtttccaacag 260
Query: 61 acccaggcaagcaccgtgtattctcatcacaaactcaggaagcaaagtctagctggtgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acccaggcaagcaccgtgtattctcatcacaaactcaggaagcaaagtctagctggtgcc 320
Query: 121 tgcattccaggggatgttaattctcccaaaccaccatcagtgtggctgaacatctgggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcattccaggggatgttaattctcccaaaccaccatcagtgtggctgaacatctgggga 380
Query: 181 agatagacaccacgggcttagacaagcctggggaagcagagagggtctgtagcgattatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 381 agatagacaccacgggcttagacaagcctggggaagcagagagggtctgtagcgactgtc 440
Query: 241 tgtctgggtcagggaccctgttggctggggagtctcctctactcccctaacac------- 293
| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctctgggtcagggaccctgttggctggggagtctcctctactcccctaacacacacaca 500
Query: 294 -tctctctctctctctctctctctctctctctctctctctctctctctctctctctctct 352
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcactctctctctctctctctctctctctctctctctctctctctctctctctctctct 560
Query: 353 ctctctctctctctctctctctc 375
||||||| |||||||||||||||
Sbjct: 561 ctctctccctctctctctctctc 583
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 135
Number of extensions: 49
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space: 286041
Effective search space used: 286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
