BAC Information

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BAC

Clone NameMSMg01-398I03
Chromosome19 (Build37)
Map Location 33,506,911 - 33,507,407
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672490, LOC100042823, Minpp1, Papss2, Atad1, Pten, B430203M17Rik, 6530404N21Rik, LOC638381
Downstream geneEG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2, Fas
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398I03.T7 (MSMg01no398_i03.b1)MSMg01-398I03.TJ (MSMg01no398_i03.g1)
ACCAG498593AG498594
length780749
length of high quality
(start - end)
124 (126 - 249)461 (74 - 534)
definitionCHROMAT_FILE: MSMg01no398_i03.b1 PHD_FILE: MSMg01no398_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:15 2005CHROMAT_FILE: MSMg01no398_i03.g1 PHD_FILE: MSMg01no398_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:15 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCANGAGGAGGCGCG
GAATTCTCACCTTTGCAAACAGAATGGCAGAGAAGCACCTGAAAAAATGC
TCAACATCCTTAATCATCAGGGACATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTCCTCAG
AAAACTGGATATAGCACTTTTGTTGTTTCCAGCAATACCTCTCCTGGGCA
TATATCCAGAATATGCCCCAACTGGCAAGAAGGACACATGCTCCACTATG
TTCATAGTAGCCTTATCCACAACAGCCAGAATCTGGAAGGTACCCAGTAT
GTCCCTCAACAGAGGATTGTATACCGAATATGTGGTACATCTACTCAATG
TATTATCACTCCCCTATCTACCCCAATGCTTTTATTTATTTCTTGGTTCA
CTGTTTTGGACCTGCAGTTCCTCCCTCCCGTAGTGATGGTCTCCTCCCTC
CAATTTAACTTTCTTTTTTTTGTACCCCTTTTCATTTTTTGTACATTTAC
CTCCACAAGTCCTATTTTATCTCCTTTTTCTCATCAAACACCTTTTCCTT
TTTCCTCCTCGTTTCTTCTATATAACATAATTGATTTACTGTACCTTGGT
TGTTCCATCCACTTCTCCTCCTCCCTTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTTCTGCGAAAATCAGTAGATGTCTACTTTAGATGTGGAG
GAAGCTGATTTATAATGAGATCTGGTATCCGTGATCAGAAGATAGGGACA
ATGTCCTAAATGTCATGTTGTATCTTTGTTATAAGATTAGAGAAGCTACA
TCTTTCGAGGCTCAGTTTTATCATTTATAATAACATTATCTTTATCGTGA
TTTATTTATATGATGAAATAAACTATAAAACATTACAAAATACAGTGATA
TAAAATTATCATTTATTTTTGTGNTATTTCACAACTTTGTGCAGATAATC
ATAGTTTTCATGAGCTCATGAGTTATGTAGAGTCACATATATATATATAT
ATATATGACATAGATACCAAGATGATGATAGATATAGATATATACATATA
CATTCATTTGTTGCTCATTTTTCATTTGGGCTCTTCCATTTTCCTCACCC
TCTTCTATGAATTCTTCTGAGCATATAAGTATAGCGATGCATATGAGATG
ATAATATACTAAATGAACATCTACTAAAATCATCTACTATTTTTAGTATC
TCTTTGCCCTCATTTCATATGCACTATTTACCAGCTAAATTATTCCCAGC
CCTTTTTTTTTTTAATTTTCCCAAAAATATAATGTCCCATAAAGGTTGCT
TTCCAATAAAAATTCTCTTTTTTTTTCTGGCTCTGGAGCCCTTCCTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_i03.g1 MSMg01no398_i03.g1 CHROMAT_FILE:
MSMg01no398_i03.g1 PHD_FILE: MSMg01no398_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:15 2005
         (461 letters)



>mm_chr19_33506747_33507607
          Length = 861

 Score =  688 bits (356), Expect = 0.0
 Identities = 446/497 (89%), Gaps = 36/497 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtagatgtctactttagatgtggaggaagctgatttataatgagatctggtatccgtg 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 cagtagatgtctactttggatgtggaggaagctgatttataatgagatctggtatccgtg 224

                                                                       
Query: 61  atcagaagatagggacaatgtcctaaatgtcatgttgtatctttgttataagattagaga 120
           |||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||
Sbjct: 225 atcagaagatagggacaatgtcctgaatgtcatgttgtatttttgttatcagattagaga 284

                                                                       
Query: 121 agctacatctttcgaggctcagttttatcatttataataacattatctttatcgtgattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 285 agctacatctttcgaggctcagttttatcatttataataacattatctttatcgtgactt 344

                                                                       
Query: 181 atttatatgatgaaataaactataaaacattacaaaatacagtgatataaaattatcatt 240
           | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 345 aattatatgatgaaataaactataaaacattacaaaacacagtgatataaaattatcatt 404

                                                                       
Query: 241 tatttttgtgntatttcacaactttgtgcagataatcatagttttcatgagctcatgagt 300
            ||||||||| || |||  ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 405 catttttgtgttaattcgtaactttgtgcagaaaatcatagttttcatgagctcatgagt 464

                                                                       
Query: 301 --------tatgtagagtcacatatatatat------atatatatatgacatagatac-- 344
                   |||||||||||| ||||||||||      ||||||||||||| |||||||  
Sbjct: 465 gctatgattatgtagagtcatatatatatatgtgtatatatatatatgacttagatacaa 524

                                                                       
Query: 345 -------------ca-agatgatgatagatatagatatatacata------tacattcat 384
                        || |||||||||||||||||||||||||||||      |||||||||
Sbjct: 525 agatgatgatagacatagatgatgatagatatagatatatacatacacatatacattcat 584

                                                                       
Query: 385 ttgttgctcatttttcatttgggctcttccattttcctcaccctcttctatgaattcttc 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ttgttgctcatttttcatttgggctcttccattttcctcaccctcttctatgaattcttc 644

                            
Query: 445 tgagcatataagtatag 461
           |||||||||||||||||
Sbjct: 645 tgagcatataagtatag 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)