BAC Information

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BAC

Clone NameMSMg01-399A14
Chromosome19 (Build37)
Map Location 10,631,271 - 10,631,505
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik
Downstream geneTmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399A14.T7 (MSMg01no399_a14.b1)MSMg01-399A14.TJ (MSMg01no399_a14.g1)
ACCAG498999AG499000
length720834
length of high quality
(start - end)
239 (80 - 318)---
definitionCHROMAT_FILE: MSMg01no399_a14.b1 PHD_FILE: MSMg01no399_a14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:57 2005CHROMAT_FILE: MSMg01no399_a14.g1 PHD_FILE: MSMg01no399_a14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCGAGCTCCGCGGA
ATTCTAAGTTCTTAACAAAAGACACGGCAAGGTGAGGTGATGGAGAAAGC
CCTGGTCCCTGCACCCCATCTGAACTACCTTCATACACACCCCTGCTCTG
AGTCTCAGAGGAAAGGAGGGTGGACCAGTTGCTTGTTTTTGTAAATAATG
GGTCTTAAATCACTCTGCCTAAACATTTTGATATTGTATACACATATAGC
TCTCATGCTACAGCGAAAAGTTTACCCATTGTCAACAGAGATGATATAAT
CTATACCCTTAATAGCACCTGTTTGTTTAAGAAAACGATGCTGTTTCATG
TCAGGATGCCACAACAGCATAGGCACCAAAAGTGGACACAGACTAAGTCA
GTAACCTGTAGGAACCTCACCCCACGCAGCTGGGTCTCCTGCCCTCTGGG
GTCTAACCCAAAGCTTGGGGCTGCTAATCATACACTCCCCACTGGTTTTT
ATCTATAGCTGTGCTCTTACACACTTTTCTTTAGTAAGCCACATATAATA
CTGAGTCCCACGCTGTAGAGACGGCTCGGTGTTTAATAGCACTGACTGCT
CTTTCCGAGGTCCTGAGTTCTATTTCCAGCATCCACATGTTGCCTCCCAA
CCATCTGTTGAAGGATCCGATGTCCCTTTTCCGCCGCGCCCGAACACAAG
TTACCGTGTTATTACATTTT
CCAATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAAGCCTCCACGTCTGACCTACCCT
TGAGACTTAAAGGACAAGCGCCGAACATCAAAAAAGAGCCAGGCTTGTCG
TTAAAGGCCTGTAATTCCAGTTCGTACAAGTTAATATATGACCACCCACT
GTTTGACTCCTTACTCCGCTATATATTTCACAATCCGCCTGTGAACCCCC
GTGAGCCTTTGTCTCCAGATAAAAGGTGAAAGAACCAGAAAGAAATACCG
AATGAAAGTTTGACAGATATATTTTTTGATATACACAGATTACATCCTTT
TAGAGAGAGTACATACATAATTTTTTCTTCCTATCTCCCTCTTACCATTT
TTCTTCTTCCCTATTAACCCCCTTTTTTCCCTTCCCCCTTTTTTTTTTTT
TTCCATATGTCGAAACCATTAATCTAAACCTCTTCCCCCTTTTACCTAAC
AATCCATTTCTTCCCTTATTCTCCTCTTTCCTTTTTTTCCTCTTTTTATC
CTTCCTCCCACCATCCCATTTCCTTTTTTTCTAATTTCCCCCCCCTTCTT
TATAATTTACTATCTCACCCCACTCTTCCTCTTTTACTTTCTTATACACC
CCTCCCCTCATTTTCATTCCTCAAAATTTGCCTCCCCCCCTTATTCCCTT
CCCCTTTCTCCCTCTCGTAACCTATTTTGCCTCCACTCTAAATTTCTCAT
CATTAATACTTCCCCCAACCGCTTCTCTTACCGTCCCCATTCATTTTCTC
CTTCCCTCTTTTTTCTTTTATCTCCCCACCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_a14.b1 MSMg01no399_a14.b1 CHROMAT_FILE:
MSMg01no399_a14.b1 PHD_FILE: MSMg01no399_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:57 2005
         (239 letters)



>mm_chr19_10631071_10631709
          Length = 639

 Score =  424 bits (219), Expect = e-123
 Identities = 231/235 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtgaggtgatggagaaagccctggtccctgcaccccatctgaactaccttcatacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtgaggtgatggagaaagccctggtccctgcaccccatctgaactaccttcatacaca 260

                                                                       
Query: 61  cccctgctctgagtctcagaggaaaggagggtggaccagttgcttgtttttgtaaataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 cccctgctctgagtctcagaggaaaggagggtggaccagttgcttgtttttgtaaattat 320

                                                                       
Query: 121 gggtcttaaatcactctgcctaaacattttgatattgtatacacatatagctctcatgct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 gggtcttaaatcactctgcctaaacattttgatattgtatacacatatagttctcatgct 380

                                                                  
Query: 181 acagcgaaaagtttacccattgtcaacagagatgatataatctatacccttaata 235
           |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 acagtgaaaagtttacccattgtcaacagagatgatataatctatagccttaata 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)