BAC Information

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BAC

Clone NameMSMg01-399M22
Chromosome19 (Build37)
Map Location 59,701,265 - 59,701,420
singlet/doubletsinglet
Overlap genenone
Upstream genePnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2
Downstream geneRab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399M22.T7 (MSMg01no399_m22.b1)MSMg01-399M22.TJ (MSMg01no399_m22.g1)
ACCAG499581AG499582
length748738
length of high quality
(start - end)
277 (44 - 320)156 (74 - 229)
definitionCHROMAT_FILE: MSMg01no399_m22.b1 PHD_FILE: MSMg01no399_m22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:55 2005CHROMAT_FILE: MSMg01no399_m22.g1 PHD_FILE: MSMg01no399_m22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAATCCGCGG
AATTCTCTGTTTTGCCCCCCATTTTTAATTGGGTTATTTGGTTTGTTGTT
GTCTAATTTCTTGAGTTCTTTATATATTTTGGATATTAGTTCTTTGTCAG
ATGTAGGACTGGTGAAGATCTTTGCCCATTCTGTAAGCTGCCGTTTTGTC
CTATTGATGGTATCCTTAGCCTTAGTGTTTAGTGAGGTAACCCAAACCGC
AAAAGACACAAATGGTATGTATACACTTATAAGTGGACATTACCCATAAA
GTACAGGATAACCATGCTACTATACTCAGACACAAAGAAACTAAGTAATG
AGGAGGTCCTAAGGGAGGATGCATGAATCTCACTCAGAAGGGGGAAACTG
AATAGCCATTGGAGGTAGACGGAAGGAGGGAACTGGATGAGAAAGAAGTT
GAAGAAGGGAAAGGGTATGGGGATCAGATGTTGATATGTTTCCACTTATT
TCTCTTCCCCCCTTCCCCTCCCCCCCNTTTCCCTCTTTCCCCCCTTCCAT
CTTTCTTTTTTCCCCTTTCTATCACTTTTTTTTCTTTCTTCCCCCCCATT
TTTTTTTTTCCCCTTTCCCCCCCTTTTCATTATTCCCTCTCCCTTTTTTC
CCCTCCCTCTCCTTTTTTTCTTTCATTCCTCCTTTTTTTCCTATTAACGC
TCGCCCCTAACCCTACATTTATCTTCTCTCTCCTCTTCCCCCCCATTA
NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTACTGATGGATGTACCAGGGCAACTCC
CGGAGCAGGAGACGGGTTGCCAACACAAGAAGGTCAGATTGTGACAGGGC
TGGCAGAGTATTTGAGGAGGGAGCTCCCTGTGGTGAAGTCTGCAGAGTCC
ATTATTCGGTAACAGAGGTTCTGATATGTGGGCTGCAGAGAACTTGAGTT
TGACAGTACAGTGCATTTGCTTTATCGTCTAGCAAAAGATCCTCTTTTGG
TCATGTTAGATCTTTTATTTTTTTTTTTCAATTTCCACTAGTCCTCCTAG
AAAGTCTAAATGTATAATCTTTCTTAATAAATCCTTTTCTACTTAAATTG
ACTAGTTTCTGTGCTTTGAACACTGCACTTATAGACCTATATAGCCTCAC
CCAGAAATATGGAACTGGAAATTCCCTTCTTGAGTATGCCTAGTATCTCT
TAGTGGGTGGCCAATGCTTTGAACCAATGTGTTTTATTTACCTACCGCCT
TTTAGGTTGTGCCCTCCCGACTTGGATTAGATACATACGCCGCCAATTTG
AGATACTTTTCGAAACACTTTATCTTTACGATACCATCCTCACCTATTTT
GCCCGCCCCTTTTTTTTTTTAAGTGCCCCACGCGTCCCTAACTGCCCTTG
TCTTTATCTTTCACCGTATTCATTTTAACCCCCCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_m22.g1 MSMg01no399_m22.g1 CHROMAT_FILE:
MSMg01no399_m22.g1 PHD_FILE: MSMg01no399_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:55 2005
         (156 letters)



>mm_chr19_59701065_59701620
          Length = 556

 Score =  286 bits (148), Expect = 4e-82
 Identities = 154/156 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactgatggatgtaccagggcaactcccggagcaggagacgggttgccaacacaagaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactgatggatgtaccagggcaactcccggagcaggagacgggttgccaacacaagaagg 260

                                                                       
Query: 61  tcagattgtgacagggctggcagagtatttgaggagggagctccctgtggtgaagtctgc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 261 tcagattgtgacagggctggcagagtatttgaggagggagctccctgtggtgaagtttgt 320

                                               
Query: 121 agagtccattattcggtaacagaggttctgatatgt 156
           ||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagtccattattcggtaacagaggttctgatatgt 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space:    81104
Effective search space used:    81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)