BAC Information

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BAC

Clone NameMSMg01-399O15
Chromosome19 (Build37)
Map Location 30,332,634 - 30,332,878
singlet/doubletsinglet
Overlap genenone
Upstream geneJak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6, Il33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2
Downstream geneLOC100042088, LOC668020, EG546723, Dkk1, Prkg1, LOC625995, Cstf2t, 8430431K14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399O15.T7 (MSMg01no399_o15.b1)MSMg01-399O15.TJ (MSMg01no399_o15.g1)
ACCAG499662AG499663
length727726
length of high quality
(start - end)
376 (45 - 420)245 (73 - 317)
definitionCHROMAT_FILE: MSMg01no399_o15.b1 PHD_FILE: MSMg01no399_o15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:02 2005CHROMAT_FILE: MSMg01no399_o15.g1 PHD_FILE: MSMg01no399_o15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCCTGATCTTTCCCAACTTTTATCATGAATGGGTGTTGGATCTTGT
CAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTG
AGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCA
TCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTT
TAATGTGCTCTTGGATTCGGTTGGCGAGAATTTTATTGAGGATTTTTGCA
TCGATATTCATAAGAGAAATTGTTCTGAAGTTCTCTATCTTTGTTGGATC
TTTCTGTGGTTTATGTATCACAGTAATAGTGGCTTCATAAAATGAGTTGG
GTAGAGTACCTTCTACTTCCACTTTGTGAAATAGTTTGTGCAGAATTGGA
ATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGG
TCCCGGGCTTTTTTTGGCTGGTAGACTATTAATAACTGCTTCTATTTCTT
TAGGCGATATGGGACTGCTTAGATGGTCAACTTGATCCTGACTCAACTTT
GTTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGTTCCTCCAG
TTTTGCTGACTATAGCCCTCTTGTACAACGATCTCGACGCTGTTTTGCAT
CTCCCCCCTCATCTGTTGCTATGTCTC
CGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAAAATATGTTTTAAAAATGCCCTGTAA
GGATAAAGTCACTTAGAACTAAGGCGTCAGGAGCAGTGGAGAAACATCTG
GAGACACATGCTCCCTCCTTGTATCTACAGTAGCTTGAAGGTTTTGGTCT
GAGATCTCTCCTGAGGGGAAACCAAGAGTCTCAACTTCACCACAGGAAAA
AGTGACCTGGATGATGTGCCCATGCGAATCAGTCTTGGAGTTCACCAGGA
AGCATGGATTAAGCATGCAGAAGAGCCCAGGATAATAACACGACACTCCG
AAGTGTGTGTGCCGGTTTATTAATAGAGAGTCGGGAAACTCAGAAAGCAG
CCGCATGTATGGTTCTGGTGACTCTCAAGTGACTTCTCACAGGGTTGTCG
AGACATGCCTTATTTATTAGTAAATGAGATAATAAAGTGTTTTCTCATGT
TCTTTGTACGACATTACCGCTGACAAAGTAACCCCAGGTCACAGGGATTG
CACCGGTATGTCAACATTGCGCGTGCGTCGCTTGAGCGCATATCTGTGTG
CATGTGTATACGTATGTGTTTGTGTATACACCTTTTTGCGTTATCCCTAG
GTCTGTTCCCGCTTTACTTTTTGTCTTTTTTCCCATTCCCTCACGCCTCT
TTTCACCTTTTTGACCCTTCCCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_o15.g1 MSMg01no399_o15.g1 CHROMAT_FILE:
MSMg01no399_o15.g1 PHD_FILE: MSMg01no399_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:03 2005
         (245 letters)



>mm_chr19_30332434_30333078
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaatatgttttaaaaatgccctgtaaggataaagtcacttagaactaaggcgtcagga 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaataagttttaaaaatgccctgtaaggataaagtcacttagaactaaggcgtcagga 260

                                                                       
Query: 61  gcagtggagaaacatctggagacacatgctccctccttgtatctacagtagcttgaaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagtggagaaacatctggagacacatgctccctccttgtatctacagtagcttgaaggt 320

                                                                       
Query: 121 tttggtctgagatctctcctgaggggaaaccaagagtctcaacttcaccacaggaaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttggtctgagatctctcctgaggggaaaccaagagtctcaacttcaccacaggaaaaag 380

                                                                       
Query: 181 tgacctggatgatgtgcccatgcgaatcagtcttggagttcaccaggaagcatggattaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgacctggatgatgtgcccatgcgaatcagtcttggagttcaccaggaagcatggattaa 440

                
Query: 241 gcatg 245
           |||||
Sbjct: 441 gcatg 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)