BAC Information

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BAC

Clone NameMSMg01-400I15
Chromosome19 (Build37)
Map Location 6,415,528 - 6,415,720
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2
Downstream geneNrxn2, Slc22a12, LOC629372, Rps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400I15.T7 (MSMg01no400_i15.b1)MSMg01-400I15.TJ (MSMg01no400_i15.g1)
ACCAG500138AG500139
length777752
length of high quality
(start - end)		443 (128 - 570)193 (328 - 520)
definitionCHROMAT_FILE: MSMg01no400_i15.b1 PHD_FILE: MSMg01no400_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:53 2005CHROMAT_FILE: MSMg01no400_i15.g1 PHD_FILE: MSMg01no400_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCTATAATTTGCGGCGCTAAACGAATCACTATTTTCATAAACACCGCG
GAATTCTCATGGNTTTTCTCAAACCAGAGGNTGTTTGTTGGATGTAGCTC
ATGCCTCCACAGCGCTGCATAGAGGCAGGGTGGCTTTTCCTCTGTTGTAT
GACACTATTTTGAGGCACACCTGAAAAAAACATCTACTCACTCCAGACAG
GACACCGATGGGACACCAAAGCATAGATACTGCCAAATTCCAGTTGGTGA
TCCAATGTTTTTTATTTGGGGTCACTTGCAGGAATGTGGGTGAGGGGTTA
CTTACAGGAGCAAAACTGACTTTAAGTCATACGCACCAAAGCCCACCCCA
GCATGGGTGACAGTTCATGAAAGCTGAGAGCCCGCAGTTCACTGCACAAT
TCACAGGAAGCACCAGAGCTTGGAGAGAGTCTCATTGGGACAGCTCAGCT
TGCCTGAGACTCTTCTAGGTAATTTGTCTGGTTTCTATCTCTTCCAGATA
GCTTGGCTGTTCTTAGTGTCTCTCAGCAGTCCTTACTGTTTCTATAGNAT
TGGGAAGGAAGTTAATCTTGTCAGTTTCAGGGACTTCCTGAAGCCTTTGA
GTTGCTTACTTCTGAACTTAATGCATTTCTCTCCCACAGGATAATTTCTA
ACCAGCTTCTCTTTTTTTATTTTGAGCCGGGCTAGACGGTTTGGCCTTCG
TTGTCCCCTTTTTGTTGCTTTTTTCCCCTCATATCATTATATTTTACTCT
CTCCCCTTCCTCTTTCCCCTTCTTCTT

NNCCGATGCTGTGGGAGGCCTGGGGGNCGCCTGGGTCATCAGCTGGGGTG
AACTATAGAAGTTCCCAGAACATCCTAGGGGGGATAGATTGGGACCTGAT
CATGGGGATGGGGTCTCAGGCGCAGAAAACCTCAGAACACAAGACTCTTG
GGCAGAGTGGTAGGAGTCCTGAATCTGGGGGACTCGAGCCTTGGGACTAG
TGAGCTTGTGCACCCTAGAATTGCTGGTACTGGTGCAACTAGAGTTTTCA
TTCTTTGAGGCAAGACTCTTCTGCCGTTCCAGATAACCTCTTAGGCCCTG
GATCAATCCTACACTGACTGGTCCCTTGGCAGGGAGAGGGCAGNCCAGGG
TACTGGCTGTGGAGCAGAGCTAGGAGGGGTGGGGACAGCCAGAGGCTGGG
GCTGGTGTGCCTCACGCCGGGGGCTGACATCCTTGGTCATTCAGCCTCCT
GGCCTGGTGCTGCCGCCAGCCGGAAGGACAGCGACTTCCAGAGGAAATGC
ATATTGATCTTGCTCAGCTCTGGAGGCCTCCTAACCCAGCTTGCTCTTCC
CTTCTGTATTGGCAGCACTGAGAACTTGCGGGGGGGGGGTTGCTGGTCAC
CTCTTACTTACGCCAAGTCTTTTTTTTCAACATGGCTTTGGTCTCTGCAT
TTTGCCTTTTTTTTTTTTTTTCTTTGCCCTCAAACCTTAACCTCTACTTT
CTCTATGTCTCTTACTTCTTGGNTCNTTTTGTCTGTCTTTTCATCTTCCT
CG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_i15.g1 MSMg01no400_i15.g1 CHROMAT_FILE:
MSMg01no400_i15.g1 PHD_FILE: MSMg01no400_i15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:53 2005
         (193 letters)



>mm_chr19_6415328_6415920
          Length = 593

 Score =  337 bits (174), Expect = 4e-97
 Identities = 188/193 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcagggagagggcagnccagggtactggctgtggagcagagctaggaggggtggggaca 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcagggagagggcagcccagggtactggctgtggagcagagctaggaggggtggggaca 260

                                                                       
Query: 61  gccagaggctggggctggtgtgcctcacgccgggggctgacatccttggtcattcagcct 120
           ||||||||||||||||||||||||||| |  |||||||||||||||||||||| ||||||
Sbjct: 261 gccagaggctggggctggtgtgcctcagggtgggggctgacatccttggtcatgcagcct 320

                                                                       
Query: 121 cctggcctggtgctgccgccagccggaaggacagcgacttccagaggaaatgcatattga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctggcctggtgctgccgccagccggaaggacagcgacttccagaggaaatgcatattga 380

                        
Query: 181 tcttgctcagctc 193
           |||||||||||||
Sbjct: 381 tcttgctcagctc 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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