BAC Information

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BAC

Clone NameMSMg01-401C06
Chromosome19 (Build37)
Map Location 10,285,375 - 10,483,177
singlet/doubletdoublet
Overlap geneGm98, Dagla, Syt7
Upstream geneEG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik
Downstream geneGm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401C06.T7 (MSMg01no401_c06.b1)MSMg01-401C06.TJ (MSMg01no401_c06.g1)
ACCAG500596AG500597
length742740
length of high quality
(start - end)		314 (331 - 644)304 (331 - 634)
definitionCHROMAT_FILE: MSMg01no401_c06.b1 PHD_FILE: MSMg01no401_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:41 2005CHROMAT_FILE: MSMg01no401_c06.g1 PHD_FILE: MSMg01no401_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,482,864 - 10,483,177)(10,285,375 - 10,285,678)
sequence
NNTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCGACAATATGC
GCGGAATTCTCACTCCTGCCATGATTGCCATTTGTCCACTCACATAGTCT
CTCCTCCTTCCTTCCGAGGAACAGCAGAGGAGGTATTGTAAGGCTTCTTG
GAAGCTCGTGATCTGGGCTCAATCCCCAGGCCCATCTCGGTCCACATGCA
TAACCCGTGCAAGGCCCACAGTAGGTCTGAGTGTTCTCCCTTCCAATGTT
GGACAACAGTCCTGCACTCTCCTGGTATGGTGCTCAATGACAGCTAACAT
TCATTGGGGACACCTAGTGTGATGATATCACACCAGGGAGTTTGTGCATA
TAGTCTCTAGAACCTATTTAATATCCCCAACTGACAGGGGAAGAAGCAGA
GGCCTGGAGAACCAACATCCTTGAGCCTGTGATTTCCCACCCTGCTACTG
TGACCTCCCTCTGAGTAAATGGATGTCAGGAGATATGCTCTACTGTACTG
CCTGGCCACACCCATTTCCCTCCTTCCCACAGGCACCCAGGCCAGACATT
TCATGCCTGGGAGGCTTTGCATGGTGCGTTGGGCTTCCATTGTTGTGATC
ACCACAGTGACCAAAATCAACGTGAGGAGGAAAAGGTTTACTCCATCAGT
GAAGAATTCTGGTTATAACTCAAGCAAGGAAAGAAATGTAATGTAGACAC
GGAAGCAGAGCCATGTATGAATGCTGCCTTCAGGTTTACTCC

NCCTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAACATCACGGAAGGACAGGATGGTTACTGG
CCACTGATGAGAGGTGCCCTAGAGAGACAGGGAAGACAGAGGTCAGGGCA
GCCTTGTCCTAACCAGCATTGTCCTCCCCACATGACCATCACAGCCCAGG
GGTGAGCATGCTGCACTTTGAGAGCAAGGGTAGCCACCCTTTGCAGACTG
CCTTCCCGAGCTAAGGCCTCCCTTTGTCTTGTGCTCTAGGCTGTGCTAGT
GTCTCATTTACGGTGCCCATGTACCTCAGTGCAATGCAAGCAGAGGTGCT
GCTACCATCTGCAGTTGCTTGCCTCCTTCAAAATGCATATATGGCAGAGC
TGGGTTCAAATGCAGGTCTTCACGGCTCTCTGTCACTATGTACTGGTGGA
GTGTGAGGTAGGCAGCGACACACAGCTTATCTGCCTTAGCTCAGGCTTTG
ACTTGGCCTCTGTTGTGTGGGTGTAGACCAGAGCACCACAGCTGAAAGTG
ACTCAATGGCTTGGCTGTCCCTCTGTCCTTAACCATCCCTTCCTATAAGG
CCATGAGTCTCCTCCCTTATGACCCTGAACTTCTCCTTCCTCTGCTCACG
GGGNTTTATGCCTGTCTTCTCTTCCTCTCTGGAGACAGGGTCTTGGAAGC
ACAGGGAAAGAGACCAGAGGCCTCAACAGATACTTGAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_c06.b1 MSMg01no401_c06.b1 CHROMAT_FILE:
MSMg01no401_c06.b1 PHD_FILE: MSMg01no401_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:41 2005
         (314 letters)



>mm_chr19_10482728_10483441
          Length = 714

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caccagggagtttgtgcatatagtctctagaacctatttaatatccccaactgacagggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 caccagggagtttgtgcatatagtctctagaacctatttaatatccccaactgacagggg 391

                                                                       
Query: 61  aagaagcagaggcctggagaaccaacatccttgagcctgtgatttcccaccctgctactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aagaagcagaggcctggagaaccaacatccttgagcctgtgatttcccaccctgctactg 331

                                                                       
Query: 121 tgacctccctctgagtaaatggatgtcaggagatatgctctactgtactgcctggccaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgacctccctctgagtaaatggatgtcaggagatatgctctactgtactgcctggccaca 271

                                                                       
Query: 181 cccatttccctccttcccacaggcacccaggccagacatttcatgcctgggaggctttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 cccatttccctccttcccacaggcacccaggccagacatttcatgcctgggaggctttgc 211

                                                                       
Query: 241 atggtgcgttgggcttccattgttgtgatcaccacagtgaccaaaatcaacgtgaggagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 atggtgcgttgggcttccattgttgtgatcaccacagtgaccaaaatcaacgtgaggagg 151

                         
Query: 301 aaaaggtttactcc 314
           ||||||||||||||
Sbjct: 150 aaaaggtttactcc 137


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no401_c06.g1 MSMg01no401_c06.g1 CHROMAT_FILE:
MSMg01no401_c06.g1 PHD_FILE: MSMg01no401_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:41 2005
         (304 letters)



>mm_chr19_10285175_10285878
          Length = 704

 Score =  565 bits (292), Expect = e-165
 Identities = 301/304 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaatgcaagcagaggtgctgctaccatctgcagttgcttgcctccttcaaaatgcatat 60
           |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 201 gcaatgcaagcagaggtgctgctaccctctgcagtcgcttgcctccttcaaaatgcatat 260

                                                                       
Query: 61  atggcagagctgggttcaaatgcaggtcttcacggctctctgtcactatgtactggtgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggcagagctgggttcaaatgcaggtcttcacggctctctgtcactatgtactggtgga 320

                                                                       
Query: 121 gtgtgaggtaggcagcgacacacagcttatctgccttagctcaggctttgacttggcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtgaggtaggcagcgacacacagcttatctgccttagctcaggctttgacttggcctc 380

                                                                       
Query: 181 tgttgtgtgggtgtagaccagagcaccacagctgaaagtgactcaatggcttggctgtcc 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 tgttgtgtgggtgtagaccagagcaccacagctgagagtgactcaatggcttggctgtcc 440

                                                                       
Query: 241 ctctgtccttaaccatcccttcctataaggccatgagtctcctcccttatgaccctgaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctgtccttaaccatcccttcctataaggccatgagtctcctcccttatgaccctgaac 500

               
Query: 301 ttct 304
           ||||
Sbjct: 501 ttct 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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