BAC Information

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BAC

Clone NameMSMg01-403H22
Chromosome19 (Build37)
Map Location 53,890,875 - 54,030,079
singlet/doubletdoublet
Overlap geneRbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2
Upstream geneLOC100043450, Xpnpep1, LOC668545, LOC674277, Add3, 1700001K23Rik, Mxi1, Smndc1, Dusp5, LOC100043462, Smc3
Downstream geneAdra2a, LOC100043004
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403H22.T7 (MSMg01no403_h22.b1)MSMg01-403H22.TJ (MSMg01no403_h22.g1)
ACCAG502392AG502393
length802829
length of high quality
(start - end)		426 (39 - 464)277 (70 - 346)
definitionCHROMAT_FILE: MSMg01no403_h22.b1 PHD_FILE: MSMg01no403_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:48 2005CHROMAT_FILE: MSMg01no403_h22.g1 PHD_FILE: MSMg01no403_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,029,660 - 54,030,079)(53,890,875 - 53,891,151)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTC
CTGTCTGTGAACGTTTCTTCTACGTGTCCATATTAATTAGAATCATGTCA
AGAGTACATATATGCATTACCTTCAATTTTACTTTTCCCCCATTCCTTGT
TAAGAAAGCAAGATAAAATACGAATAGTTTGGCAGGCGTAGAGACAGCAT
TGATTTATTTCATATTACTATAAATATGTGTAAGTTTTACCAGGAAATTT
TTATTACTTTATATATTAACTTAGATTCCAGACACACAGATTTAAAACAA
AGAGCTGAAAATTCCTATTTAACAACCCACAACATAAACCTTAATTGGAA
CCACAGCTCTCTTGGACAACTCTAATTTACCATGTATATAAATTGTGAAA
TTCCCCCAGCAGACTCTCAACATCAAATACTTTGATCAAACATTATCTAA
GATGTCTTTATACCATAGAAACACTACTAAAAAAAAAACAAGATTTACTT
ATAAATACTGTTCAAACTCTTTCTTGCCAGACAACCTAAAAATTGCCCAA
ATTTCCCTGAATGACTGGAAATAAGTTTAAAAATTGGCTATCCATTGGGG
CTAAAAACAATGACCCCAAATAACTTTTTAAAAAAAAGGTTTGCCCCCCC
ACAAAATTCCCCCGGCCCATTTTCTTCTAAACCCTCTTCGGGGGGCGAGT
TTTGTGACCTGCTAAAAACGCCCCCTCTTTTGGGGCGGGAAACCAAAATA
ATCATCCGGGCTCCTCCAAATTTTTCTTTTTCTGCCTTAAAGCAACCCTA
CT

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACTCTAGCGAGGTGTTTTGGAAACTAAACA
GGCCGGGATTGGTGAAGAACGGAGAGTGGGTGTTTCATGGGCACAGGGCT
CTGTGGCTGGCTGGGAGTGACCATTGTAGGTGAGCATGACTGTGTTCAGT
GCCACGGAGCTGTGCCCTTAAACATGGTTAACGGTGCATTTCATGTCGTA
AGGCCTCACTACAATTAAAAGAATTCTTATATAGGCCTCCCTGTTCTTGT
GGCAAAGCTCATTACGTTTTCTTTCTTAAAGCTCACAATTGAGCAGCGTT
CAGTACACTCACCACTAGGCTGGNCTCACTCACATACCCAGCCCTCCCTA
CCATCAGCCCCCAGGGAGTGGTCCTATCTGCTTCCCGGTTTGCCTTTCTA
CTACCTTCTTACTCACCGCCTTTCCGTCCTATATGCCCCCTTTGCCCCGT
CTTTTTCCCCCTATTTTTTCTTACCTTCCTCGCTTCCTTTCCCTCCCCCA
TTCTCCCCCCCCCCTTCTCCCCCCCTTCCTTTTCCCCTTCTCCTTTTCTC
CCCCCTTCTCCCCCCCTCTCCTCCTTTTTTTTTTTCTTTCCTCCCTTCCC
TTCCCCTCCCCACCATTTGCCCCCCCCCTTTCTCCTATCCTTTCCCTCCC
CCCCTTCTTATTCCCCTTTCTCCTCCCCTTCCTTTATCCTCTCCTCCTCC
TCTCTACCCCCCCTTTCCCTTTCCCCCCTCTTTTCTTCTTCCTCTCTTTC
CCACCATTTCTCCCCCTTTTTCTCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_h22.b1 MSMg01no403_h22.b1 CHROMAT_FILE:
MSMg01no403_h22.b1 PHD_FILE: MSMg01no403_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:48 2005
         (426 letters)



>mm_chr19_54029454_54030279
          Length = 826

 Score =  789 bits (408), Expect = 0.0
 Identities = 417/420 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcctgtctgtgaacgtttcttctacgtgtccatattaattagaatcatgtcaagag 66
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gaattcctgtctgggaatgtttcttctacgtgtccatattaattagaatcatgtcaagag 567

                                                                       
Query: 67  tacatatatgcattaccttcaattttacttttcccccattccttgttaagaaagcaagat 126
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 566 tacatatatgcattaccttcaaatttacttttcccccattccttgttaagaaagcaagat 507

                                                                       
Query: 127 aaaatacgaatagtttggcaggcgtagagacagcattgatttatttcatattactataaa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aaaatacgaatagtttggcaggcgtagagacagcattgatttatttcatattactataaa 447

                                                                       
Query: 187 tatgtgtaagttttaccaggaaatttttattactttatatattaacttagattccagaca 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tatgtgtaagttttaccaggaaatttttattactttatatattaacttagattccagaca 387

                                                                       
Query: 247 cacagatttaaaacaaagagctgaaaattcctatttaacaacccacaacataaaccttaa 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cacagatttaaaacaaagagctgaaaattcctatttaacaacccacaacataaaccttaa 327

                                                                       
Query: 307 ttggaaccacagctctcttggacaactctaatttaccatgtatataaattgtgaaattcc 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttggaaccacagctctcttggacaactctaatttaccatgtatataaattgtgaaattcc 267

                                                                       
Query: 367 cccagcagactctcaacatcaaatactttgatcaaacattatctaagatgtctttatacc 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cccagcagactctcaacatcaaatactttgatcaaacattatctaagatgtctttatacc 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no403_h22.g1 MSMg01no403_h22.g1 CHROMAT_FILE:
MSMg01no403_h22.g1 PHD_FILE: MSMg01no403_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:48 2005
         (277 letters)



>mm_chr19_53890675_53891351
          Length = 677

 Score =  497 bits (257), Expect = e-145
 Identities = 272/277 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactctagcgaggtgttttggaaactaaacaggccgggattggtgaagaacggagagtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactctagcgaggtgttttggaaactaaacaggccgggattggtgaagaacggagagtgg 260

                                                                       
Query: 61  gtgtttcatgggcacagggctctgtggctggctgggagtgaccattgtaggtgagcatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtttcatgggcacagggctctgtggctggctgggagtgaccattgtaggtgagcatga 320

                                                                       
Query: 121 ctgtgttcagtgccacggagctgtgcccttaaacatggttaacggtgcatttcatgtcgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgttcagtgccacggagctgtgcccttaaacatggttaacggtgcatttcatgtcgt 380

                                                                       
Query: 181 aaggcctcactacaattaaaagaattcttatataggcctccctgttcttgtggcaaagct 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 aaggcctcaccacaattaaaagaattcttatataggcctccctgttcttgtggtaaagct 440

                                                
Query: 241 cattacgttttctttcttaaagctcacaattgagcag 277
           |||||||||  || |||||||||||||||||||||||
Sbjct: 441 cattacgttaactatcttaaagctcacaattgagcag 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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