Query= MSMg01no406_e13.b1 MSMg01no406_e13.b1 CHROMAT_FILE:
MSMg01no406_e13.b1 PHD_FILE: MSMg01no406_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:32 2005
(228 letters)
>mm_chr19_18891571_18892198
Length = 628
Score = 350 bits (181), Expect = e-101
Identities = 217/233 (93%), Gaps = 7/233 (3%)
Strand = Plus / Plus
Query: 1 ggaagaaagacagagtacccaccaaattggctttcacaaatgtagtaagtattttaagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaagaaagacagagtacccaccaaattggctttcacaaatgtagtaagtattttaagct 260
Query: 61 gttattctggaaaggatataaaaattgaacataaaattctgttcatgtagtcattataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttattctggaaaggatataaaaattgaacataaaattctgttcatgtagtcattataaa 320
Query: 121 ataatgctcctaactgcctacccaggtacagtttttcccccc-------aggttatacaa 173
||||||| |||||||||||||||||||||||| || |||||| ||| | ||||
Sbjct: 321 ataatgcccctaactgcctacccaggtacagtattccccccccccccccaggggaaacaa 380
Query: 174 gtgtgctatgtgtacttttaaacttttaagtaggggctagagagattgtacag 226
||||||| |||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 381 gtgtgctgtgtgtacttttaaacttttaagtaagggctggagagattgtacag 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space: 135561
Effective search space used: 135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no406_e13.g1 MSMg01no406_e13.g1 CHROMAT_FILE:
MSMg01no406_e13.g1 PHD_FILE: MSMg01no406_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:32 2005
(448 letters)
>mm_chr19_19077122_19077969
Length = 848
Score = 619 bits (320), Expect = 0.0
Identities = 359/372 (96%), Gaps = 1/372 (0%)
Strand = Plus / Minus
Query: 1 ataaatgatagcagcagcctggatgcttacccctgagataagcaaagatgggaagattac 60
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 372 ataaatgatagcagcagcctggatgcttacccctgatataagcaaagacgggaagattac 313
Query: 61 atccaatgctagtcacggtgttgaagccacatttcagacaatgtcaggagccttctcact 120
|||||| ||||||||| |||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 312 atccaacgctagtcactgtgttgcagccacatttcagacaatgttaggagccttctcact 253
Query: 121 catgtgagtaggtgctcttagcatttcagaagtatgcagccttcttccttccttcccagc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tatgtgagtaggtgctcttagcatttcagaagtatgcagccttcttccttccttcccagc 193
Query: 181 actttggagttaggaatctttgcactgactgcagcctactacaagaacaagcttctttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 actttggagttaggaatctttgcactgactgcagcctactacaagaacaagcttctttga 133
Query: 241 ctcatattgagagaaacacaggtttgtacccaggtctatgggttccaagataaatattta 300
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 132 ctcagattgagagaaacacaggtttgtacccagttctatgggttccaagataaatattta 73
Query: 301 aaaggctatttgaaaaagaaa-tgaccatttagcgaaataatcatagcaagttctaacgc 359
||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| ||
Sbjct: 72 aaaggctatttgaaaaaaaaaatgaccatttagcgaaataaccatagcaagttctaaggc 13
Query: 360 aggcgctttgac 371
||||||||||||
Sbjct: 12 aggcgctttgac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
