Query= MSMg01no406_g10.b1 MSMg01no406_g10.b1 CHROMAT_FILE:
MSMg01no406_g10.b1 PHD_FILE: MSMg01no406_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:42 2005
(296 letters)
>mm_chr19_43242434_43243129
Length = 696
Score = 427 bits (221), Expect = e-124
Identities = 277/302 (91%), Gaps = 12/302 (3%)
Strand = Plus / Plus
Query: 1 agggcagaaagggaacttttctcttccttttcaagtataatgctaacatcgaagtcaggt 60
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggcagaaagggaacacttctcttccttttcaagtataatgctaacatcgaagtcaggt 260
Query: 61 tgcaacccccaagacagcattctgtctgtgctcagctcaggccggacatgggctcagtaa 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tgcaacccccaagacagcattctgtctgtgctcagctcaggccagacatgggctcagtaa 320
Query: 121 acactcagcactccttaaaactcttatcttttatgtttctctttgacaggaaaagccatt 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 321 acactcagcactccttaaaactcttatcaagtatgtttctctttgacaggaaaagtcatt 380
Query: 181 gctttcttatctgctcctataacccctaccccac--tttt----tttttttccncacccc 234
|||||||||||||||||||||||||||||||||| | || | || ||||||
Sbjct: 381 gctttcttatctgctcctataacccctaccccaccctattccact------cctcacccc 434
Query: 235 catcccaccttctcatcccaccctctgtgatccctcaccccacgctatctcaccccccaa 294
|||||||||||||||||| |||||||| || ||||||||| |||||||||||||||||||
Sbjct: 435 catcccaccttctcatcctaccctctgcgacccctcacccgacgctatctcaccccccaa 494
Query: 295 cc 296
||
Sbjct: 495 cc 496
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space: 197169
Effective search space used: 197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no406_g10.g1 MSMg01no406_g10.g1 CHROMAT_FILE:
MSMg01no406_g10.g1 PHD_FILE: MSMg01no406_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:42 2005
(488 letters)
>mm_chr19_43451069_43451956
Length = 888
Score = 897 bits (464), Expect = 0.0
Identities = 482/488 (98%)
Strand = Plus / Minus
Query: 1 atccattcagttttcttcacttaggtaaagtgaaaaatagcaatttttcttatttcaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 atccattcagttttcttcacttaggtaaagtgaaaaatagcaatttttcttatttcaata 757
Query: 61 aatgttgtttgattatcaatgatatgctaagattgtgctaggttttgaggctaaaacatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 aatgttgtttgattatcaatgatatgctaagattgtgctaggttttgaggctaaaacatg 697
Query: 121 aacaatactctcatagttctatggtcttacatagtcattataattttatcatagtctctg 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 aacaatactctcagagttctatggtcttacatagtcattataattttatcatagtctctg 637
Query: 181 gtatcatcttttgactttattcaggctaatctttgcttaggtcttctactgtgtacatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gtatcatcttttgactttattcaggctaatctttgcttaggtcttctactgtgtacatga 577
Query: 241 ttttttttacacctgctaccttggatccgcatcttaccttttaagatttaagttttcact 300
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ttgatggtacacctgctaccttggatccgcatcttaccttttaagatttaagttttcact 517
Query: 301 tgtctttcctagctctaagtctatatgctctttcattagcctgctcacccctaacctagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tgtctttcctagctctaagtctatatgctctttcattagcctgctcacccctaacctagt 457
Query: 361 gtgcactaatgttgctctctcaaattttccaaatttttctaaattttctgcacatacagt 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 456 gtgcactaatgttgctctctcaaattttccaaatttttctaaattttctggacatacagt 397
Query: 421 ttaattaagtgcatgtgcctccaatttatatttgattaacttaaatacataatttttgtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttaattaagtgcatgtgcctccaatttatatttgattaacttaaatacataatttttgtt 337
Query: 481 tttatcaa 488
||||||||
Sbjct: 336 tttatcaa 329
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
