Query= MSMg01no406_g15.b1 MSMg01no406_g15.b1 CHROMAT_FILE:
MSMg01no406_g15.b1 PHD_FILE: MSMg01no406_g15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:42 2005
(525 letters)
>mm_chr19_52678085_52679009
Length = 925
Score = 961 bits (497), Expect = 0.0
Identities = 518/529 (97%), Gaps = 8/529 (1%)
Strand = Plus / Minus
Query: 1 tttcaatgtaggcgcccgagaacatcatcaggttggttcttctggttaagaacgacacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tttcaatgtaggcgcccgagaacatcatcaggttggttcttctggttaagaacgacacac 492
Query: 61 ttatgacttggcaagaatgtggtcgcatttggaaatgaatttaataaccatgatcatatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ttatgacttggcaagaatgtggtcgcatttggaaatgaatttaataaccatgatcatatt 432
Query: 121 tcacatcaaaggaattcttagaaaattactgtaattagaaccgctggatataaatacctt 180
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 431 tcacatcaaaagaattcttagaaaattactgtaattagaaccgctggatataaatatctt 372
Query: 181 agaatatggtaatttgtttattgtatttccttatgaacattgaatgttacaattatcata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 agaatatggtaatttgtttattgtatttccttatgaacattgaatgttacaattatcata 312
Query: 241 attttttt----tgcattggatacatctaagcctctaaacaattattcaattaagtaaaa 296
| ||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 311 a----tttgaaatgcattggatacatctaagcctctaatcaattattcaattaagtaaaa 256
Query: 297 tcgctctcataagcaagaaatttgtggtagcatttctctctttagatctttcctaccagc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tcgctctcataagcaagaaatttgtggtagcatttctctctttagatctttcctaccagc 196
Query: 357 tttactgaagtataattgagaaacaaatgcaatgcatctaaggcacgcagctaatgctta 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tttactgaagtataattgagaaacaaatgcaatgcatctaaggcacgcagctaatgctta 136
Query: 417 tgtctgtatctcctgtattcttggcctcagactcactatgtagacaagaatgaccttgaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 tgtctgtatctcctgtattcttggcctcagactcactatgtagacaagaatgaccttgaa 76
Query: 477 cacgtgatccttcttgtctttctatactgagtattggaattactggcca 525
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 cacgtgatccttcttgtctttctatactgagtattggaattactggcca 27
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no406_g15.g1 MSMg01no406_g15.g1 CHROMAT_FILE:
MSMg01no406_g15.g1 PHD_FILE: MSMg01no406_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:43 2005
(473 letters)
>mm_chr19_52516673_52517545
Length = 873
Score = 884 bits (457), Expect = 0.0
Identities = 469/473 (99%)
Strand = Plus / Plus
Query: 1 tattgtaagaagaatcacctctgatgagagttgagtgatgctcagttgtaggtcctttgc 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattgtaagaagaatcgcctctgatgagagttgagtgatgctcagttgtaggtcctttgc 260
Query: 61 agagagagactccatagtccgtagacttgtaaaggaatgaaccaggaggaaaggccaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagagagactccatagtccgtagacttgtaaaggaatgaaccaggaggaaaggccaaga 320
Query: 121 gaggcctccaagaagtagctttgcattttaacttcatcactggatgcttacgcccgtatg 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gaggcctccaagaagtagctttgcattttaacttcatcattggatgcttacgcccgtatg 380
Query: 181 tggagaacttttgtcactctctttttatcaagtgctcattcataatgtgtccccagccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggagaacttttgtcactctctttttatcaagtgctcattcataatgtgtccccagccag 440
Query: 241 ctggaaaagaagcacaaagaacatttagacaactgtggctcctatgccaaggcttcgact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggaaaagaagcacaaagaacatttagacaactgtggctcctatgccaaggcttcgact 500
Query: 301 gacaactgacccaggcagggtgagcagcagctgtacatcccaaggcagcttagctatggg 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 gacaactgacccaggcagggtgagcagcagctgtacatcccaagacagcttagctatggg 560
Query: 361 ggaggggtaaaagcaggatgaatcattgacacttaggtttcaaatgtgaaagcacatttt 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaggggtaaaagcgggatgaatcattgacacttaggtttcaaatgtgaaagcacatttt 620
Query: 421 aagcaacccagactgactgtctttttctcaatcctttcacactcaccccagtg 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagcaacccagactgactgtctttttctcaatcctttcacactcaccccagtg 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
