BAC Information

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BAC

Clone NameMSMg01-407F10
Chromosome19 (Build37)
Map Location 58,946,597 - 59,088,923
singlet/doubletdoublet
Overlap gene6430537H07Rik, 4930506M07Rik
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a
Downstream geneLOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407F10.T7 (MSMg01no407_f10.b1)MSMg01-407F10.TJ (MSMg01no407_f10.g1)
ACCAG505321AG505322
length753762
length of high quality
(start - end)		186 (45 - 230)428 (75 - 502)
definitionCHROMAT_FILE: MSMg01no407_f10.b1 PHD_FILE: MSMg01no407_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:57 2005CHROMAT_FILE: MSMg01no407_f10.g1 PHD_FILE: MSMg01no407_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,946,597 - 58,946,777)(59,088,496 - 59,088,923)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAGTCCAAAGTTCAGCTTACTGGTCAGCTCCAAAATACAGGCATG
TATAATTTACAGCGATATAGAGTCTAGGGCCTGGTGAAGTGGGGTCTGCG
TGTTAACAGATGTGTGATTTCGTGCACGTGTGTTTGTATGTGTGTGATTG
TATGGTTGTGTTTTGGAGGGGTTAGAGGNAATTTANNCNTANNNNTGNNA
TTCNNANNCNNAANNNANATATTAANCTATGAATATTGTTAAGATTTTTT
AAAATATTATGAAATTTGTTTTTANNAGTTTAAAAAAAAAAAAGATTTAT
TGATGATTATTATTATTGATTATAAGGGTGTAAAATTGGAGAATGTATTT
CAGTTTATATTAAAAATTAGTGGATTTTTTTTTTATAATTGAATATTTCT
TTTTTTTGTATAATTTGAGTAGTTTTTCATATAATTATTTTTATGTATTT
GGAATTTTTTATTTACATATTTATTTAGATTCTAACCACAACTTTCCTCT
CTTTGTAGACCCCACTTCCACCAAAAAAACATCTTCCTCTCGGAGTGACC
CCCTTCGTACAATTTTCAACAGTCTAACTCTATATCACCTCCTACGGTTT
TTAACCACATTTTCCAGTTCCTTCTCAATTATCCCCACCCCTTCCCTAAT
ATCTTATAGCCTACACTTATATACAACTATAATATCTTGTATATTTGATA
GTT

CGATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTTTTTCTGAAGCCTGGCTGGTTT
TCATCATTACCTCCACCTGACTTATATTCTAGAGAGACTTTGCCTTCTTG
GTGATTCTACCCACCAGCATCCAGAATTAGAGGAGTCAGGCTACTTATCC
TGATGGCTGCCTACCTCCTCATGAGGTTAGTTAGCTGCCTTTGGATAATT
TATTCTTGAACAAATGGCATTTAAACTTCTGCTGGATGTTTTAGCTTTCA
TTAACTCATGTGATTTGTTTAATCCTTTCACACAGAGAAGCCCTTTATTC
CTGCTTTGCACCTTAGCTGATCCAGCTGAATAGAATGTGTAGCGTGTTCC
TCCCACAGGACTATGGAAATGGGACTTTGCTTTTGAAAAAGAGTCTCATT
ACTTTGCCTTGCCGAGTTGGGTATGACATAATCTACTTTAAGCCATTGAA
GTAGTTGAGGTTAAATAATCTTTACNAGTGATCGAGTCCAAGAGTCAATT
GAAAGAATTTCTAGTATTTTAAATTCTCTCTCTCCTGGGAAGCTAAACCC
ATAGGAGATATTCCCAAGGTGGCATTTTAAAAGGGGAAAGGGGCGCCTCT
GAACTTTCTCTTGGGGCCAGAAATTTTGGCTGGAAAAAAAAGGCACTTCC
TTTGAGAAGGGGGAGACTTTATAAAGCCCTTCCCGTTTGGTTCGGTGCTC
TGATTTTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_f10.b1 MSMg01no407_f10.b1 CHROMAT_FILE:
MSMg01no407_f10.b1 PHD_FILE: MSMg01no407_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:57 2005
         (186 letters)



>mm_chr19_58946394_58946979
          Length = 586

 Score =  319 bits (165), Expect = 6e-92
 Identities = 177/181 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcagtccaaagttcagcttactggtcagctccaaaatacaggcatgtataatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcagtccaaagttcagcttactggtcagctccaaaatacaggcatgtataatt 263

                                                                       
Query: 64  tacagcgatatagagtctagggcctggtgaagtggggtctgcgtgttaacagatgtgtga 123
           |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 264 tacagcgatatagagtctggggcctggtgaggtggggtctgcgtgttaacagatgtgtga 323

                                                                       
Query: 124 tttcgtgcacgtgtgtttgtatgtgtgtgattgtatggttgtgttttggaggggttagag 183
           || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgcatgcacgtgtgtttgtatgtgtgtgattgtatggttgtgttttggaggggttagag 383

            
Query: 184 g 184
           |
Sbjct: 384 g 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no407_f10.g1 MSMg01no407_f10.g1 CHROMAT_FILE:
MSMg01no407_f10.g1 PHD_FILE: MSMg01no407_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:57 2005
         (428 letters)



>mm_chr19_59088296_59089123
          Length = 828

 Score =  828 bits (428), Expect = 0.0
 Identities = 428/428 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttttttctgaagcctggctggttttcatcattacctccacctgacttatattctagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tcttttttctgaagcctggctggttttcatcattacctccacctgacttatattctagag 569

                                                                       
Query: 61  agactttgccttcttggtgattctacccaccagcatccagaattagaggagtcaggctac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 agactttgccttcttggtgattctacccaccagcatccagaattagaggagtcaggctac 509

                                                                       
Query: 121 ttatcctgatggctgcctacctcctcatgaggttagttagctgcctttggataatttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttatcctgatggctgcctacctcctcatgaggttagttagctgcctttggataatttatt 449

                                                                       
Query: 181 cttgaacaaatggcatttaaacttctgctggatgttttagctttcattaactcatgtgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cttgaacaaatggcatttaaacttctgctggatgttttagctttcattaactcatgtgat 389

                                                                       
Query: 241 ttgtttaatcctttcacacagagaagccctttattcctgctttgcaccttagctgatcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttgtttaatcctttcacacagagaagccctttattcctgctttgcaccttagctgatcca 329

                                                                       
Query: 301 gctgaatagaatgtgtagcgtgttcctcccacaggactatggaaatgggactttgctttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gctgaatagaatgtgtagcgtgttcctcccacaggactatggaaatgggactttgctttt 269

                                                                       
Query: 361 gaaaaagagtctcattactttgccttgccgagttgggtatgacataatctactttaagcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gaaaaagagtctcattactttgccttgccgagttgggtatgacataatctactttaagcc 209

                   
Query: 421 attgaagt 428
           ||||||||
Sbjct: 208 attgaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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