BAC Information

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BAC

Clone NameMSMg01-407M05
Chromosome19 (Build37)
Map Location 9,147,371 - 9,147,912
singlet/doubletsinglet
Overlap geneAhnak
Upstream geneEG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g
Downstream geneScgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407M05.T7 (MSMg01no407_m05.b1)MSMg01-407M05.TJ (MSMg01no407_m05.g1)
ACCAG505642AG505643
length746759
length of high quality
(start - end)
619 (44 - 662)534 (75 - 608)
definitionCHROMAT_FILE: MSMg01no407_m05.b1 PHD_FILE: MSMg01no407_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:30 2005CHROMAT_FILE: MSMg01no407_m05.g1 PHD_FILE: MSMg01no407_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTTAGCTCTGAGCCCCATTTTTTAAATTGGGTTATTTGATTTT
CTGGAGTCCACCTTCTTGAGTTCTTTATATGTATTAGATATTAGTCCCCT
ATCTTATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTT
TTGTCTTATTGACAGTGTCTTTTGAATTTGGCAGTTTCTTAGACTGAAAT
TTTCTTAAAACTATGAATAGTTCTACCTCGAGATGCAGCTATACCACTTC
TAGGCATATTCCCCATATGATGCTTTAGCATCTCACAAACACAGTTAATC
AAGAACGTTCATAGAAGCTTTATTTGTAATAGTCAGAAACTAGAAACAAC
CTAGATATCCATCAACTTAAAATGACTAAAGAAAAGTGATACATCTGTAC
AATGGAATATTATTCAGCTATTAAAAACAAAGACATCATGAATTTAAAGT
AAATGTATGAAACTTGAGAATATTATTCTGAGTTGTCATAACCACAAAAA
GACATGTATGATATTTCTTTAGGGGTATGAGGCCACCTGTAGAAAGCTCA
GTGGTGCTATAGAGAGACCAACCCACTTACAAATCTTTTCACCAAAAATT
TAGCCTGACTACAAAAAATTCAGGCATGGGGACTGGAACAGAGACTGGGG
TATTGGCCAACCAAAAACTGGCCCAACTTGAGACCCATTTCATGGG
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATGTTAGATAGTGTTATATAGTGAA
TTCTAAGGATACTTGAGGCTACCCAGTAAGACCATGTCTCTTATATTTTT
GGTTGTGAGCCTAGACTTTAATGGCTGAGCCATTTCTCTAGCACAAGGCC
ATGTCTCAAAAAATTAGATAAAATAGTAAAAGAGGGCTGGTGAGATGGCT
CAGCGGTTAAGAGCACTGACAACTCTTCCAGAGGTCATGAGTTCAAATCC
CAGCAACCACATGGTGGCTCACAACCATCCATAATGAGAAACAAACAAAC
AAACAAAACTTATGGGCTAGAGTGAGCAGGGCCAGAGCGAGCAGGGGGTG
GGAGGGAGAGGCTGGAGCAAGATGGAGAAGGGAAGGGGGAAAATAATAAT
AATAATAATAGACGTGGGAAGGTGAGCAGGATTTTTGACATGTATATCAC
TGAAGTGTGATATTCTTACCATTTGTTTCATATTATCTGGTGTTTATATT
GAAGATTTATTTATTTATTTATTTATTTATTTATTTATTATTTATTCTGG
TTATTTGTTCATGTATACCTGTATGTGTGTGTTCATGCGTCACTGCCCCT
CATGCGGAAGTTATAGGAAAATTTTTGGGACCCACATCCTCTCTAAATTT
GGCCGCATCGAAGAACCCGGACAGTGTCGCCACACGTGGGCGCTTATATG
CCCTTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_m05.g1 MSMg01no407_m05.g1 CHROMAT_FILE:
MSMg01no407_m05.g1 PHD_FILE: MSMg01no407_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:30 2005
         (534 letters)



>mm_chr19_9147171_9148104
          Length = 934

 Score =  990 bits (512), Expect = 0.0
 Identities = 531/542 (97%), Gaps = 8/542 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgttagatagtgttatatagtgaattctaaggatacttgaggctacccagtaagacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgttagatagtgttatatagtgaattctaaggatacttgaggctacccagtaagacca 260

                                                                       
Query: 61  tgtctcttatatttttggttgtgagcctagactttaatggctgagccatttctctagcac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 tgtctcttatatttttggttgtgagcctagactttaatggctgagccatttccctagcac 320

                                                                       
Query: 121 aaggccatgtctcaaaaaattagataaaatagtaaaagagggctggtgagatggctcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggccatgtctcaaaaaattagataaaatagtaaaagagggctggtgagatggctcagc 380

                                                                       
Query: 181 ggttaagagcactgacaactcttccagaggtcatgagttcaaatcccagcaaccacatgg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 ggttaagagcactgacaactcttccagaggtcatgagttcaaatcccagcaatcacatgg 440

                                                                       
Query: 241 tggctcacaaccatccataatgagaaacaaacaaacaaacaaaacttatgggctagagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggctcacaaccatccataatgagaaacaaacaaacaaacaaaacttatgggctagagtg 500

                                                                       
Query: 301 agcagggccagagcgagcagggggtgggagggagaggctggagcaagatggagaagggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcagggccagagcgagcagggggtgggagggagaggctggagcaagatggagaagggaa 560

                                                                       
Query: 361 gggggaaaataataataataataatagacgtgggaaggtgagcaggatttttgacatgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggggaaaataataataataataatagacgtgggaaggtgagcaggatttttgacatgta 620

                                                                       
Query: 421 tatcactgaagtgtgatattcttaccatttgtttcatattatctggtgtttatattgaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatcactgaagtgtgatattcttaccatttgtttcatattatctggtgtttatattgaag 680

                                                                       
Query: 481 atttatttatttatttatttatttatttatttatt--------atttattctggttattt 532
           |||||||||||||||||||||||||||||||||||        |||||||||| ||||||
Sbjct: 681 atttatttatttatttatttatttatttatttatttatttattatttattctgtttattt 740

             
Query: 533 gt 534
           ||
Sbjct: 741 gt 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)