BAC Information

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BAC

Clone NameMSMg01-410D11
Chromosome19 (Build37)
Map Location 26,347,340 - 26,347,909
singlet/doubletsinglet
Overlap gene1700048O14Rik
Upstream geneAnkrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806
Downstream geneLOC100041846, LOC100041857, Smarca2, Gm815, LOC100042576, Vldlr, LOC100042588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410D11.T7 (MSMg01no410_d11.b1)MSMg01-410D11.TJ (MSMg01no410_d11.g1)
ACCAG507516AG507517
length7461,680
length of high quality
(start - end)
553 (74 - 626)---
definitionCHROMAT_FILE: MSMg01no410_d11.b1 PHD_FILE: MSMg01no410_d11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:53 2005CHROMAT_FILE: MSMg01no410_d11.g1 PHD_FILE: MSMg01no410_d11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTAGTTTACCTATCTGTGATCTTCCTAGTCTATTCCAAAGA
TTTTCAACTAGATTCCGTCTCTATTCTTGAATATACTTCGAGTGGATACT
GAGTCACATATCTAGTTCATGAAACCATTCAACACTTTATTTTGTTTTTT
TTTTCAGCCTTCTGCTTAACTTTTCAACATCCCTCCCTAGCTAGTTCTAG
AATCTGGAAAATAGCCTCAACACAAAGCTAGTCATGTGCTACCCCCATAG
CCCAGAACTAAACTCTGCCTTATTCTCCATTCACTAGAAGTTGATACAAA
TCTCAGAATCCAAACCTCTTGTCAAAGGCCAGGATCTCTAACTGGTATCA
AAGAGAAAATGGTTGCAAAATCCAGCTCATCTCTGAGGTCCTCCCTTTCC
AGAGTCTCAGTACCTTTGGGACTCATGGCCTCCACAGCTACCCTACACCA
TTAAACAAGTGAGTACTGTCAATTTCTTGACATTTTAAACTATCCACCAT
GCAATACAGCTATGATACTAGCTATTCCAACTACCCAAAATCCCACATCC
TTCCAGGACCTTTGGGTAGTGCTGATTGGTCAGTCCCCACAGAGAGCATA
GCTTTCACTTAGACCAATATCCTGGCAGAAAAGAAGAAACTTCTTTTGCT
TCCAGAAAACTCTAAGCTTGCTTTTTAGTGTTTCTCAAACCAAGAA
AATAAGAATAAGAGACAGGTTAGGAAAAGTNAGAGCAGAGGAGAGGGTTC
GAGCTTATACTAATAATATATGAAGGTAGGGAGATTCAGACAGATGGAGT
ATACACATGCGTATAGTATAATAAGACTACCATCGTGGCAACATAGTATA
TGTATGGTTTTTGTTTGTTCTTTTGTAGTTGATATTTAATAGAGTAGAAC
AGCATAAATGCGGTTGAGTGGAGTAGGGGGCGTTATAAGGGACTAAGAAG
CTGCAGTGATGGGACCATAACAACGTGATGAGATGTTCACAAAGTTATAG
AGGGTGACACAGCAGAGTGGCGTAAACGCGTTGTTGCGAGAAATCGGGGC
TACGTGCGTAGATCAGAGTGCAACATAAGGAGTGATGGAGGACGCGATAT
AGCAGATATGATACGTGATCGCCGAGGTGTAGAGTATTAAGTAGAAACTA
AGCAGGGACATGGCCGTTCTATCTTATAGCAGTATAGTAGTGGAATGGAA
TACATAATCCAAGTATTACGGCATGTCGAATAAGCTGCATGACTTACACG
ACAGTGGGCTTTCGCGCNCATCCGCGCTATACTATGCTTGACGGGTATGT
ATCTACAGACATAACTACTACATGGATTGCAATTACTTCTCGTCGCGCGT
CGGCATTAGATGCGTAGACATAGTGTGTATAGTGTGACGCTATGTAATAC
TATAGCGATGTAGACGCGCTGCGGTTAGCGCATGCTTGTGCGACGATGTT
TCAATAGAACGTTCGCTCGNATGAGGAGAAGCATATCATCGTTTGAGAGT
GGTATATCGAAGACGTACACGAACGAGCATANTATTGCGACGTGCGTAGG
TAGGGCGAGGGCGATAGTAAGGAATATATTGGTTGTACTGCTGTATACAC
GCGAGCACGCGGAACTCGCTGAGTGCTATTACTTGTGAACTGCACCATTT
NAGCTGAACCTGACTACTCTCGTCTGTTACAGTTATCGTATGAAANTATA
TTACGTTACGTTTAATGATTTTGATNGTAGATGACGACGAGACGTGTGCG
AGATTGATATAGTTAGCGAGTATTCAGTATTATTAGCATGCATTAGTCTA
TCGGACGCGCACTGCGTGTTATTACAGCGTCTANTAACGCGTCGCGCGTA
TAATGTATATATCTCCNCGATGTGCGTCATACTCTCGCATGTATATACGT
CACCCGACGNCATCGCTGACATGATATATGAAGCGCGATGTACACGTGAT
GCCGCACATACGAGGCGTGTGTGCGATATTGATACGAGNCGCCGGCTACG
CGTCNATATACGAGAGTATTTTGATACGTAATATAATACGAGATCGTTTG
AGCGTGCGACANCNGGATTGACTACAGTCTTTGACGATGTATAGTTGGGN
TANANTTATGTCGCTGANATTGTAAGACATATACTGCGTCGACTGACATT
CTTTATGAGACACACGCGCTGTTATTAGCGACCAGTTTCCTTACTGCGTC
GCGAGTGTTAANCGGCGATATTCAACTATAATCGCGCTTCATCATNCGTT
ATCTGTTCATTACCTAGCGGCTACGCGANATACTGACTCGCAGACNCATA
GATATATGGTACGACACATGTAGCGATATACGNCGCGTATANTACTGTGA
CGAGTCGCAACACGTATATGCGACTGCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_d11.b1 MSMg01no410_d11.b1 CHROMAT_FILE:
MSMg01no410_d11.b1 PHD_FILE: MSMg01no410_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:53 2005
         (553 letters)



>mm_chr19_26347158_26348110
          Length = 953

 Score =  920 bits (476), Expect = 0.0
 Identities = 539/570 (94%), Gaps = 18/570 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgatcttcctagtctattccaaagattttcaactagattccgtctctattcttgaata 60
           ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 183 tgtgatcttcctagtctattccaaagattttcaactaaattccttctctattcttgaata 242

                                                                       
Query: 61  tacttcgagtggatactgagtcaca-tatctagttcatgaaaccattcaacactttattt 119
           ||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct: 243 tacttagagtgggtactgagtcacaatatctagttcatgaaaccattcaacactttattc 302

                                                                       
Query: 120 tg--ttttttttttcagccttctgcttaacttttcaacatccctccctagctagttctag 177
           ||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tggtttttttttttcagctttctgcttaacttttcaacatccctccctagctagttctag 362

                                                                       
Query: 178 aatctggaaaatagcctcaacacaaagctagtcatgtgc---------------tacccc 222
           |||||||||||||||||||||||||||||||||||||||               ||||||
Sbjct: 363 aatctggaaaatagcctcaacacaaagctagtcatgtgccgaagtctcccaccctacccc 422

                                                                       
Query: 223 catagcccagaactaaactctgccttattctccattcactagaagttgatacaaatctca 282
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 423 catagcccagaactaaactctgccagattctccattcactagaagttgatacaaatctca 482

                                                                       
Query: 283 gaatccaaacctcttgtcaaaggccaggatctctaactggtatcaaagagaaaatggttg 342
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 483 gaatccaaacctcttgtcaaaggccaggatctctaactggtaccaaagagaaaatggttg 542

                                                                       
Query: 343 caaaatccagctcatctctgaggtcctccctttccagagtctcagtacctttgggactca 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 caaaatccagctcatctctgaggtcctccctttccagagtctcagtacctttgggactca 602

                                                                       
Query: 403 tggcctccacagctaccctacaccattaaacaagtgagtactgtcaatttcttgacattt 462
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 603 tggcctccacagctaccctacaccattaaacaactgagtactgtcaatttcttgacattt 662

                                                                       
Query: 463 taaactatccaccatgcaatacagctatgatactagctattccaactacccaaaatccca 522
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 663 taaactatccaccatgcaatacagctatgatactagctattccaactatccaaaatccca 722

                                         
Query: 523 catccttccaggacctttgggtagtgctga 552
           |||| |||||||||||| ||||||||||||
Sbjct: 723 catctttccaggaccttcgggtagtgctga 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)