Query= MSMg01no412_d23.b1 MSMg01no412_d23.b1 CHROMAT_FILE:
MSMg01no412_d23.b1 PHD_FILE: MSMg01no412_d23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:33 2005
(518 letters)
>mm_chr19_40862959_40863876
Length = 918
Score = 978 bits (506), Expect = 0.0
Identities = 514/518 (99%), Gaps = 4/518 (0%)
Strand = Plus / Minus
Query: 3 gaattcacagccactattc--gtagagttgggccttttcttttatttcctatttctgttc 60
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gaattcacagccacta--caggtagagttgggccttttcttttatttcctatttctgttc 661
Query: 61 ttgaagctgatttatttttctatatttattacaaaagacctctaaaacctgatatccttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ttgaagctgatttatttttctatatttattacaaaagacctctaaaacctgatatccttg 601
Query: 121 gcatcttgtaacaaatattccttcctcttgggccaatgttagcccacatgccccagaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gcatcttgtaacaaatattccttcctcttgggccaatgttagcccacatgccccagaaca 541
Query: 181 cagggtttaaggcaaaacttgaatgatcacaagtaaactggacagagaaacttatgcaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 cagggtttaaggcaaaacttgaatgatcacaagtaaactggacagagaaacttatgcaac 481
Query: 241 ttacctcctaaaaaaggaggctgccattgggttttaccacagtcccatgacatctgcttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ttacctcctaaaaaaggaggctgccattgggttttaccacagtcccatgacatctgcttc 421
Query: 301 ataaaataccacaaacctcagaaccaagtcagccacacggtctcttggctcaaggccagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ataaaataccacaaacctcagaaccaagtcagccacacggtctcttggctcaaggccagt 361
Query: 361 tggagacctgatgattgcattgtgcagatggagtactcaaagatcattctagaatgttag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tggagacctgatgattgcattgtgcagatggagtactcaaagatcattctagaatgttag 301
Query: 421 gagttttcttccaccaacctggtaattcattacgtgattctgtgctcattcagaacgaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gagttttcttccaccaacctggtaattcattacgtgattctgtgctcattcagaacgaat 241
Query: 481 gagaaaaatttaaaatccccagaaatgaactccttggg 518
||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gagaaaaatttaaaatccccagaaatgaactccttggg 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_d23.g1 MSMg01no412_d23.g1 CHROMAT_FILE:
MSMg01no412_d23.g1 PHD_FILE: MSMg01no412_d23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:33 2005
(447 letters)
>mm_chr19_40681186_40682032
Length = 847
Score = 760 bits (393), Expect = 0.0
Identities = 427/447 (95%), Gaps = 14/447 (3%)
Strand = Plus / Plus
Query: 1 ctatgtgctgcttgctgactgagcacagtgagcagctttaacaagttcagtagtgttttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatgtgctgcttgctgactgagcacagtgagcagctttaacaagttcagtagtgttttg 260
Query: 61 gttgggtccaaacagagcatcagagtaaatgctaatgatacatgcgtactgagtatctgc 120
||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct: 261 gttgggtccaaacagagcatcagagtaaatgttaatgatgcacgcgtactgagtatctgc 320
Query: 121 cactctagctaaaatagtaaatgtcgagacttcaattaagaccaaagcaggccttaatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactctagctaaaatagtaaatgtcgagacttcaattaagaccaaagcaggccttaatat 380
Query: 181 ttggattctgtttcgcacacattacagaaacagattattgcttttctatgaagtagagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggattctgtttcgcacacattacagaaacagattattgcttttctatgaagtagagtg 440
Query: 241 tgaaattttattatagataattttataggagaaagagaaggtactcagaaagacagacag 300
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagattttattaaagataattttataggagaaagagaaggtactcagaaagacagacag 500
Query: 301 acagacagacagacagaagcagtgtggatactggctctgcaaagtgctatttctgggact 360
|||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagacag--------------tgtggatactggctctgcaaagtgctatttctgggact 546
Query: 361 cagcctctaaactctctcagagggaaggctgctgaccctgaagtgaacgatgaagtcttg 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cagcctctgaactctctcagagggaaggctgctgaccctgaagtgaacgatgaagtcttg 606
Query: 421 ctgtaaggagacccctggcttgacagt 447
|||||||||||||||||||||||||||
Sbjct: 607 ctgtaaggagacccctggcttgacagt 633
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
