BAC Information

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BAC

Clone NameMSMg01-412M15
Chromosome19 (Build37)
Map Location 20,037,403 - 20,200,543
singlet/doubletdoublet
Overlap geneLOC100042218
Upstream geneRorb
Downstream geneLOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412M15.T7 (MSMg01no412_m15.b1)MSMg01-412M15.TJ (MSMg01no412_m15.g1)
ACCAG509477AG509478
length756764
length of high quality
(start - end)		249 (70 - 318)442 (81 - 522)
definitionCHROMAT_FILE: MSMg01no412_m15.b1 PHD_FILE: MSMg01no412_m15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:16 2005CHROMAT_FILE: MSMg01no412_m15.g1 PHD_FILE: MSMg01no412_m15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,037,403 - 20,037,651)(20,200,114 - 20,200,543)
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCAGAAATCCGCGGA
ATTCACTGAACTTTCATTGTGCGCCTTACTTTTTGGTATGTAAGCATGTT
ATTCTAGTCATTTTTTATTTTGGTCATGAACACACTTTGCTAGAGCTATT
TTAATGTTTCAAATAATAAAACTAACATTTAGTTAACTTAAGTGTGTCAC
TCAACTCTGTTTAATAGAAATTTTTAAAAACTTGTATGTGCGTATAGAAA
ATCAAAACCATCAAGATGATATTGACCTTTTGACTCGTGTCCCCATCACC
ACTGCATGGAGGTTTTGCTCTTTATATCTATTTGCTCTGTCCTATATCAA
GAGGATGCTGAGGCTCATTTGACAAACTAAAATCTGTTAGTAACTTTGAG
GAGGCATAGTAATGGTAATGTTGTCAACATTAGAGACATAAGAGAAACTA
ACTATTCATAGATAATCCATACTCCACCTAAAGGAAATCCCAAATCTAAT
TATCAGTTTCTGAGCACTTCAGGCATAATCATCTTTATAACATGGAGTGA
CCTGACTCTTGTTCTGCACGTTGTTTTTCCAATCTTAACGCAGTCCTGGG
GGTGCTTAAATTTCTTGGTCATCCCCTTATATACCCTTGCCTTCTTACAT
TCATACTAGCACTTTATTTTCTATCTACCTACCTGTTATTCCTATCCCCC
CTTATTCTATCCCTTTGTCTTTCCTTTATCCCCCAAGATATTTCCTCCCC
CTCCTT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGAACAAAGTAAGGAATA
CAGGAGATTCAAGGGTTAAATTTTCTTAGTAGGTTGGTTTAAAGAAAATG
CATAAACTTTCATAGTGGCTCACACCTGTAACCTTAGCCCTATTTTGGCT
GAAACAGGACAATTGCCCTGAGTTGAAAGTAGCCTCAGCTACACCTTGAG
TGAGACACAGGGCTGAGTCAAAAAGTGAGAACCTGTCTCAAAGGTGAAAA
GAAGAGAGAAAATGAAAACCTATAATTTATTAAACTAACAATGACATTAC
TTTGTATTACATGCATAAAAAACTATCAAATTTGATTTGGTTACTGCATG
GTGACTGTCAGAACACAGTTCCAGAGTTAAGCACTCTAAAGGATTTCTGA
GAGCTTATGAGAAGACTCAACGTANACTAGAGTCTTGTAACATCTGTTCC
TCCATAACAGAATTTCTTCGTGTGATGTACTTTTTGTGCTCCTCCTANGT
GTAGAACATAGGAGTGGTTCTATTTTGGAAGACTTGTGCTCCTACCCTAA
ATTATTTAATTGAATTTTTTAAATTACCGGCCTTTAACACAAAACCCCGT
AACCCTCCCTTTGTTTCTTTTTTTCCCCCGAACTTCCTCGGTGTTCCCCC
GCGCGAATTCCCCTTTTTCTTAACTTACCAAACGCCCTAATCATTTCCCA
CCCTCACCCGTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_m15.b1 MSMg01no412_m15.b1 CHROMAT_FILE:
MSMg01no412_m15.b1 PHD_FILE: MSMg01no412_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:16 2005
         (249 letters)



>mm_chr19_20037203_20037851
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcgccttactttttggtatgtaagcatgttattctagtcattttttattttggtcatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcgccttactttttggtatgtaagcatgttattctagtcattttttattttggtcatga 260

                                                                       
Query: 61  acacactttgctagagctattttaatgtttcaaataataaaactaacatttagttaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacactttgctagagctattttaatgtttcaaataataaaactaacatttagttaactt 320

                                                                       
Query: 121 aagtgtgtcactcaactctgtttaatagaaatttttaaaaacttgtatgtgcgtatagaa 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 aagtgtgtcactcaactctgtttaatagaaaattttaaaaacttgtatgtgcgtatagaa 380

                                                                       
Query: 181 aatcaaaaccatcaagatgatattgaccttttgactcgtgtccccatcaccactgcatgg 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcaagaccatcaagatgatattgaccttttgactcgtgtccccatcaccactgcatgg 440

                    
Query: 241 aggttttgc 249
           |||||||||
Sbjct: 441 aggttttgc 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no412_m15.g1 MSMg01no412_m15.g1 CHROMAT_FILE:
MSMg01no412_m15.g1 PHD_FILE: MSMg01no412_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:16 2005
         (442 letters)



>mm_chr19_20199702_20200543
          Length = 842

 Score =  779 bits (403), Expect = 0.0
 Identities = 423/430 (98%)
 Strand = Plus / Minus

                                                                       
Query: 13  aaggaatacaggagattcaagggttaaattttcttagtaggttggtttaaagaaaatgca 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 aaggaatacaggagattcaagggttaaattttcttagtaggttggtttaaagaaaatgca 783

                                                                       
Query: 73  taaactttcatagtggctcacacctgtaaccttagccctattttggctgaaacaggacaa 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 taaactttcatagtggctcacacctgtaaccttagccctattttggctgaaacaggacaa 723

                                                                       
Query: 133 ttgccctgagttgaaagtagcctcagctacaccttgagtgagacacagggctgagtcaaa 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ttgccctgagttgaaagtagcctcagctacaccttgagtgagacacagggctgagtcaaa 663

                                                                       
Query: 193 aagtgagaacctgtctcaaaggtgaaaagaagagagaaaatgaaaacctataatttatta 252
           |||||||||||||||||||||||||||||||||||||||||||||||||||||   | ||
Sbjct: 662 aagtgagaacctgtctcaaaggtgaaaagaagagagaaaatgaaaacctataagggagta 603

                                                                       
Query: 253 aactaacaatgacattactttgtattacatgcataaaaaactatcaaatttgatttggtt 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 602 aactaacaatgacattactttgtattacatgcataaaaaactatcaaatttgatttggtc 543

                                                                       
Query: 313 actgcatggtgactgtcagaacacagttccagagttaagcactctaaaggatttctgaga 372
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 542 actgcatggtgactgtcagaacacagttccagagttaagccctctaaaggatttctgaga 483

                                                                       
Query: 373 gcttatgagaagactcaacgtanactagagtcttgtaacatctgttcctccataacagaa 432
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 482 gcttatgagaagactcaacgtaaactagagtcttgtaacatctgttcctccataacagaa 423

                     
Query: 433 tttcttcgtg 442
           ||||||||||
Sbjct: 422 tttcttcgtg 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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