BAC Information

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BAC

Clone NameMSMg01-414P19
Chromosome19 (Build37)
Map Location 36,962,092 - 37,116,980
singlet/doubletdoublet
Overlap geneTnks2, Fgfbp3, Btaf1, Cpeb3
Upstream geneA830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c
Downstream geneMarch5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414P19.T7 (MSMg01no414_p19.b1)MSMg01-414P19.TJ (MSMg01no414_p19.g1)
ACCAG511152AG511153
length795769
length of high quality
(start - end)		450 (75 - 524)498 (79 - 576)
definitionCHROMAT_FILE: MSMg01no414_p19.b1 PHD_FILE: MSMg01no414_p19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:13 2005CHROMAT_FILE: MSMg01no414_p19.g1 PHD_FILE: MSMg01no414_p19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,116,748 - 37,116,980)(36,962,092 - 36,962,587)
sequence
NGGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCG
CGGAATTCCATTTTATTTCGTGGACATTAAATTCAACCAGAAAGTACTGT
TTACTCTCCCACCAGTCATGCGTTACTGCACCAGTTGGCATATCTTACCA
TGCCAAGATGTATGTCTCGTTAGCACATGTATCTGACCAAATTAGAATAA
ATATTCCATGGCCTCCTTGAGAATAAGTGGTAGTGGGGTTTTGTTAATAT
TTTTTTCAGAATCTTGAAACATTCTGAGTTCATGGAGACTCAGAAAAATA
ACAGATTTGGGCTGGCGAGATGGCTCTTTTTTTAAGAGCGCAGACTGCTT
TTCCGAAGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAAC
CATCCATAACGAAATCTGACTCCCTCTTCTGGAGTATCTGAGGACAGCTA
CAATGTACTTACATATAATAAATAAATAAATCTTTATAAAAAAAAGAAAA
ATAACAGATTCAACTTTCCTGGTTTTTCAAGTAACCAAGCTCCCTCTCTC
CTGACAGTAATTCTCATACAAGATTAATCTCCCAAAAAAGAGGTACAGGG
TCCTCTTTGAATTGTTCCCCCGTGAAAAACCATTGATGGGTTCACCCGGA
GAATTTCTCAAAACATTTTTAGTTTTTCTAAAGGGGGGCGGCTCCTGTGT
AACTACCCTAAAAAATTGCTCCCGGTCTCTAATAGCCTGCCTATCTTCAT
TCTTCTCTCCCCTTACTCATTTCGTTAATCTTTTACTCCTTACTT

NNCCGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCCCCAAACTCTATGATGGA
AGGAAAGAAGTAAGTTGTGAGATCACCAACTCTCACTTCACACTCCCCAC
ACTGCTTCTCATGTGCCGTGTGGTGCGGTTTTGGCTAAGCCTCTGTTAGC
AAAGACAGGAGAAGGGTCACTATTTGCCCTTGGAGTCTCTTATAGCAGAT
AATGAAAGAGAAGAGGCACAAGGAGAAGAATAAGAGCATGGCAGGCTAGG
CTGCTTGGGTACTTCTGACTGTCTAGGAAAGTGCACAGAGGTCAAGCACG
GTTGAAGACCTGATGTCTCTTAGCCTCACTGGGTGCAGTGAACTGTGAAG
CCCTTAGGGGTCCTGGGTTTTATGTATTTGACTCTGAAATGTGGTAACTT
TTGCATTAGAATTTCAAATACTCTGTTGTTTTTCTAATTGAGTCTATCCT
TTGGCATCTAAACCACCATCCTATTGGAATCGTTAATCAACATAAGGAAT
TCTTAGCTCTAAAAATAGCAAGCTCTAAGGTCTGTAGGGATGATTTAGAA
GGAACAGAAAGAGCAATATTGCTGCTGGAGAAGACTGCAGTTAGGTTTCC
CAAGCCCGCATTGGGTGTTCAAAATGCCTGTGAATCTGGGTCTCACTGGC
ATACCACCTAAACCCCCGAAATAATGTTAACCTTGTTGTTGCGGGTCTCT
TGCCTTTTTTCTTCTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_p19.b1 MSMg01no414_p19.b1 CHROMAT_FILE:
MSMg01no414_p19.b1 PHD_FILE: MSMg01no414_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:13 2005
         (450 letters)



>mm_chr19_37116473_37117322
          Length = 850

 Score =  443 bits (229), Expect = e-128
 Identities = 232/233 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattaaattcaaccagaaagtactgtttactctcccaccagtcatgcgttactgcaccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cattaaattcaaccagaaagtactgtttactctcccaccagtcatgcgttactgcaccag 449

                                                                       
Query: 61  ttggcatatcttaccatgccaagatgtatgtctcgttagcacatgtatctgaccaaatta 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttggcacatcttaccatgccaagatgtatgtctcgttagcacatgtatctgaccaaatta 389

                                                                       
Query: 121 gaataaatattccatggcctccttgagaataagtggtagtggggttttgttaatattttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gaataaatattccatggcctccttgagaataagtggtagtggggttttgttaatattttt 329

                                                                
Query: 181 ttcagaatcttgaaacattctgagttcatggagactcagaaaaataacagatt 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttcagaatcttgaaacattctgagttcatggagactcagaaaaataacagatt 276


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no414_p19.g1 MSMg01no414_p19.g1 CHROMAT_FILE:
MSMg01no414_p19.g1 PHD_FILE: MSMg01no414_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:13 2005
         (498 letters)



>mm_chr19_36961890_36962787
          Length = 898

 Score =  920 bits (476), Expect = 0.0
 Identities = 491/496 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   tccccaaactctatgatggaaggaaagaagtaagttgtgagatcaccaactctcacttca 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tccccaaactctatgatggaaggaaagaagtaagttgtgagatcaccaactctcacttca 262

                                                                       
Query: 63  cactccccacactgcttctcatgtgccgtgtggtgcggttttggctaagcctctgttagc 122
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 263 cactccccacactgcttctcatgtgccgtgtggtgcagttttggctaagcctctgttagc 322

                                                                       
Query: 123 aaagacaggagaagggtcactatttgcccttggagtctcttatagcagataatgaaagag 182
           || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 323 aaggacaggagaagggtcactatttgcccttggaatctcttatagcagataatgaaagag 382

                                                                       
Query: 183 aagaggcacaaggagaagaataagagcatggcaggctaggctgcttgggtacttctgact 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aagaggcacaaggagaagaataagagcatggcaggctaggctgcttgggtacttctgact 442

                                                                       
Query: 243 gtctaggaaagtgcacagaggtcaagcacggttgaagacctgatgtctcttagcctcact 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gtctaggaaagtgcacagaggtcaagcacggttgaagacctgatgtctcttagcctcact 502

                                                                       
Query: 303 gggtgcagtgaactgtgaagcccttaggggtcctgggttttatgtatttgactctgaaat 362
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 503 gggtgcagtgaactgtgaagcccttaggggtcgtgggttttatgtatttgactctgaaat 562

                                                                       
Query: 363 gtggtaacttttgcattagaatttcaaatactctgttgtttttctaattgagtctatcct 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtggtaacttttgcattagaatttcaaatactctgttgtttttctaattgagtctatcct 622

                                                                       
Query: 423 ttggcatctaaaccaccatcctattggaatcgttaatcaacataaggaattcttagctct 482
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttggcatctgaaccaccatcctattggaatcgttaatcaacataaggaattcttagctct 682

                           
Query: 483 aaaaatagcaagctct 498
           ||||||||||||||||
Sbjct: 683 aaaaatagcaagctct 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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