BAC Information

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BAC

Clone NameMSMg01-415I16
Chromosome19 (Build37)
Map Location 33,318,662 - 33,319,065
singlet/doubletsinglet
Overlap gene6530404N21Rik
Upstream geneSgms1, 2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1, Papss2, Atad1, Pten, B430203M17Rik
Downstream geneLOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415I16.T7 (MSMg01no415_i16.b1)MSMg01-415I16.TJ (MSMg01no415_i16.g1)
ACCAG511576AG511577
length738763
length of high quality
(start - end)
408 (64 - 471)240 (69 - 308)
definitionCHROMAT_FILE: MSMg01no415_i16.b1 PHD_FILE: MSMg01no415_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:57 2005CHROMAT_FILE: MSMg01no415_i16.g1 PHD_FILE: MSMg01no415_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGT
ATGGACCCAAGAATGATTACATCACGGGAGAGACCTGTCAGCCAGTGGAG
TGTCTTCTGGCAGGAGCTGTGTGAATATCTCTGTGACCCAGGTTTTGCAC
TATGCTCCTGAGCTAGAGTCAGGTCTAGAGTTAGAGATTTCGCAAGGGAG
AGTTAAGAGACATCCTTGCAGTAGTATTTCCATGACAAAGGGCATTATTT
GTCCCTAGATGTCCTTGTCTGTGTCTGAGAAGGACCTCCAAGCTTCCTTT
GGGCCACTTTGATGTTACTTTAACTTTAGTAAGCAAATGACGGTGTTGTC
AGATGTAGACTGTGGGCTGTCCTAACTCATATTCTTCCTCAAGATTGGCA
ATTGAGGTACTTGTGCAGGAAGGAGTAAAATCATTTTTAAAATTGCTTTA
AAGTAATGTTTGTACTATGCTCAAGAACACAATTCTTTCTACAAAGACTT
CTCTGATCTTACACGTTCACCTTAATTTATTACTCTTAGGGCTCTCTATG
ACATTTATAACGACTTCTTATATCTGGCACATACCCATTATGCGTAGCTT
ATATTTCTATGATATAAGGATTCTGTATTAATGGATGGAATTGTCGGAAC
CCCCCAGTCCTTTTGACCCCTTTTTGTACCGTCTTTCTGAGCGCCCTTTT
TATTTGTGGGAAACTGTTGCCTTTTTTCATCTCTTGCC
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTCCAAGTCATTGTTAGAAAACTTAACTGGCT
ACCTGACTAATACAGAAGTGGATGCTCACAGCCATCCATTGGACTGAGCA
CAGGGTCCCCAATGGAGGAACTAGAGAAAGGACCCAAGGAGCTGAAGGGT
TTTGCAGCCCCATAGGAGGATCAACAATATGAACCAACCAGTACCTCCCA
GAGCTCCCAGGGACTAAACCTCCAACACATGGAGGGACCTATGGCTCCAG
CCACACTTGTTTTTGAGGATTGCCTCGTGGGACATCAATGAGAGGAGAAG
CTCTTAGTCCTATGAAGGCTCAATGCCCCAGTGTAGGGGAATGCCACGAC
AGGGAAACAGGAGTGGGTGGACTAGCGAGAAGGGGGAGAGGGGATATGAT
AGGAGCGTTTCCCTTTTCCCTCCTCCCCCTCCCCCTTTCTTTCCCCTCTT
TCCTCCTCCTCTTTCCTTTCTTTCTCCCTTCCTTTTTTTCCTCTTCCCCC
TTCACCCCCTTCCTCTTCCCTTTCCTTTCTACCCTTCGCTTTTCCCCTTC
CCTTCCTTTCTCCTGTCCCTCATTCTTTTCTTCCCCCGCTCTCTTTTTTC
TTCCTCTTCATCCCCTTTACCTTTCCCCCCCCTATTTCTTCTCCTCTCTT
TTCCTTCCCCCTCCCTCTCTTTTCCCTCCCTTCTGTTCCGTCCCTACCCT
TTTTCTTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_i16.b1 MSMg01no415_i16.b1 CHROMAT_FILE:
MSMg01no415_i16.b1 PHD_FILE: MSMg01no415_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:57 2005
         (408 letters)



>mm_chr19_33318462_33319265
          Length = 804

 Score =  716 bits (370), Expect = 0.0
 Identities = 397/408 (97%), Gaps = 4/408 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgattacatcacgggagagacctgtcagccagtggagtgtcttctggcaggagctgtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 604 tgattacatcacgggagagacctgtcagccagtggagtgtcttctggcaggagctgtatg 545

                                                                       
Query: 61  aatatctctgtgacccaggttttgcactatgctcctgagctagagtcaggtctagagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aatatctctgtgacccaggttttgcactatgctcctgagctagagtcaggtctagagtta 485

                                                                       
Query: 121 gagatttcgcaagggagagttaagagacatccttgcagtagtatttccatgacaaagggc 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gagatttcgcaaggaagagttaagagacatccttgcagtagtatttccatgacaaagggc 425

                                                                       
Query: 181 attatttgtccctagatgtccttgtctgtgtctgagaaggacctccaagcttcctttggg 240
           |    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 424 a----ttgtccttagatgtccttgtctgtgtctgagaaggacctccaagcttcccttggg 369

                                                                       
Query: 241 ccactttgatgttactttaactttagtaagcaaatgacggtgttgtcagatgtagactgt 300
           ||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 368 ccactttgaagttactttaactttagtaagtaaatgaaggtgttgtcagatgtagactgt 309

                                                                       
Query: 301 gggctgtcctaactcatattcttcctcaagattggcaattgaggtacttgtgcaggaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggctgtcctaactcatattcttcctcaagattggcaattgaggtacttgtgcaggaagg 249

                                                           
Query: 361 agtaaaatcatttttaaaattgctttaaagtaatgtttgtactatgct 408
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 agtaaaatcatttttaaaattgctttaaagtaatgtttgtactatgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 804
Length adjustment: 9
Effective length of query: 399
Effective length of database: 795
Effective search space:   317205
Effective search space used:   317205
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)