Query= MSMg01no415_j03.b1 MSMg01no415_j03.b1 CHROMAT_FILE:
MSMg01no415_j03.b1 PHD_FILE: MSMg01no415_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:00 2005
(249 letters)
>mm_chr19_3967179_3967827
Length = 649
Score = 302 bits (156), Expect = 2e-86
Identities = 232/266 (87%), Gaps = 22/266 (8%)
Strand = Plus / Minus
Query: 1 taatctacaagaacctgcctcagaaaacaaagcaaactacaccacacacacacacacaca 60
||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||
Sbjct: 570 taatctacaagaacctgcctcagaaaacaaaacaaactataccacacacacacatacaca 511
Query: 61 cacacacacac-----acacacacaca---cac----acaca-cacac-acacac---ac 103
||||||||||| | | | | | | | | | | | | | | | | ||
Sbjct: 510 cacacacacactgtctagata---a-atggctctgggagaaatc-ctctgccccctggac 456
Query: 104 acacactgtctagataaatggctctgggagaaatcctctgccccctggagttgggaccat 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 acacactgtctagataaatggctctgggagaaatcctctgccccctggagttgggaccat 396
Query: 164 aactgcagtagcctaaggattagcatcctttgaagatgtgtagcatctcccacctcccta 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aactgcagtagcctaaggattagcatcctttgaagatgtgtagcatctcccacctcccta 336
Query: 224 gaggtcagctagatgcttgccccaac 249
||||||||||||||||||||||||||
Sbjct: 335 gaggtcagctagatgcttgccccaac 310
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no415_j03.g1 MSMg01no415_j03.g1 CHROMAT_FILE:
MSMg01no415_j03.g1 PHD_FILE: MSMg01no415_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:00 2005
(471 letters)
>mm_chr19_3820062_3820932
Length = 871
Score = 888 bits (459), Expect = 0.0
Identities = 468/471 (99%)
Strand = Plus / Plus
Query: 1 caactgataacagcactgatcagtgaatctaagaccagcaggagcctcaggagagagtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caactgataacagcactgatcagtgaatctaagaccagcaggagcctcaggagagagtgg 260
Query: 61 ggtcagaagtttagggtgtcaaaaaagttgagccaggcataaaagtccacatctgtgggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtcagaagtttagggtgtcaaaaaagttgagccaggcataaaagtccacatctgtgggg 320
Query: 121 gcaagtggaccatgctaccaaacagaagaactggtaagttcgaagcaggttcaaaacccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaagtggaccatgctaccaaacagaagaactggtaagttcgaagcaggttcaaaacccc 380
Query: 181 aggaaatctcacaattgaaaatggcaggtgttagaaccagctgccagccagtctttctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaaatctcacaattgaaaatggcaggtgttagaaccagctgccagccagtctttctct 440
Query: 241 gtcctggaacacataaccatgacatcccgagagaaccatgataaccagtcatgtagcata 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcctgggacacataaccatgacatcccgagagaaccatgataaccagtcatgtagcata 500
Query: 301 aaaacctagagttttccatactaacaaggtatctagataggcctcgagtgtctggccagt 360
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 501 aaaacctagagttttccatactaacaagttatctagataggcctcgagtgtctggccaat 560
Query: 361 gagcgtcccttcctgggcatccagcccttcctgcaacaagtatttaatccctgattcaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagcgtcccttcctgggcatccagcccttcctgcaacaagtatttaatccctgattcaac 620
Query: 421 cttagtaagacggacacactcacatccaccatagaaataaagcattttgga 471
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttagtaagacggacacactcacatccaccatagaaataaagcattttgga 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
