BAC Information

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BAC

Clone NameMSMg01-415J12
Chromosome19 (Build37)
Map Location 14,370,666 - 14,370,977
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505
Downstream geneEG667433, Tle4, EG433225, EG635497
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415J12.T7 (MSMg01no415_j12.b1)MSMg01-415J12.TJ (MSMg01no415_j12.g1)
ACCAG511616AG511617
length800786
length of high quality
(start - end)
---335 (69 - 403)
definitionCHROMAT_FILE: MSMg01no415_j12.b1 PHD_FILE: MSMg01no415_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:01 2005CHROMAT_FILE: MSMg01no415_j12.g1 PHD_FILE: MSMg01no415_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCGGCATGGATCCGCGGAATTCA
GTATTTACTGTTACCACACACACACAGAGAGAGAGGGGGGGGTGTTTTAG
GATAGAAGAAACCCACTGAGTCTAGTAGTTGTTAGACCTGTAGAAGAGGC
CAGTCAAGCTGCTGACAGATGAGACATGACACTGAGACTTCAGAAAGGAA
TTATCTCCAACCACTCTCAGCTCTTCCAGTGCTCTATGACTGTTTTCATT
CAGTATCTTCCACTTGCCAATGATTAGAGTGAACTCTCCATCTTGCCACC
CACTGGTTTTCATCATTTTGACGGACGCGATCAACCCAGCTCATTCTACT
TGTCCTTCCCTCCCCTCTTCTGTCCGCATATCTGACCTCCCTTTGCATGA
TTTCCCATCCCCCCACCCTATCTGGTCTTCGTCTCCCCTTTCCCTTCCTT
CTTTTCCCTCTTCCTTTCTTTCCTTTTTTTCGCGCCCTTTTCTTTGCACA
CCCTTCTTCGTCTTCTCCTCTCCCCTCCTTCTTCTCCCTCTTCTTTTCCC
TCTCTTCCTTTTTCTCCCCCCCATAATCCGCCATCTCCTCCCTCCCTCGC
CCCCCCCTTTTTCTTTCCTTACCGGCGTTCCTTCCTTCCCCTTTTTTTTT
TTTTTTTTCGCTCATCCCATCGCTCTTTCTTTTCTCTCTTTTTCGCCTCC
CCTTCCCCTTTTTTTTTTTTTCCCCCGTTTTTTCCCTTTCTTTTGTGCCC
TCCCGTCCCCTTTCCTTTCTCTCCCTCTATTCTCTTTTCCCTTTCTTTTG

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCCGCCATCCCAGCTCTCTGTGGTTCTATGGC
TGAAACTGACTCTGTATAGGTCAGTTTTCTTTCCCCTAAAATGTGCTTTC
TTTGTCAAATGACGATGAAGTCTTTAATCTTTTCTACAAAGTAAAGTTCT
TTTTCTGTCTGTCCAACTCACTTGTAAGACCCAGGTTTCTGGATAATACC
ATATTTGGGAAATTTGATTAGGGTCCCCCTTCACATCTGAAGTTTATATA
ATCTAGTGTTTTCCTTTGAGAAAAGTAGTATCAGGCAGGTGAGATGGGTG
AGAGAGCTGGCTGCCAATGCTGAGGTAAGATGGGTAAGAGAGATGCTGAG
ATGGTTAAGAGAGATGCTGAGATGTCTGAGAGAGCTGGCCGCCAATGCTG
AGGACCTAATTTTTGTTCTTATACCAATGATAGGAGGATAGAACCCATTT
CTACAAGCTGCCATTTGTTTTCTACACTTATGTGCTCACATGTCGTACTC
ATATCCAATACCTGCTTTATATGTCCAACAATATCTAGCCATTCTCGTTC
TTACCCCTATTATCCATCCCTCGTTAGACCCATCGCAATCCCTCTCCTTC
TTTTTTTTTTCTTTTCACTCCTTTCCTCCTCATTTCCTCTTCACCTCTTC
TCCTACTTTTCCTCTTTTTCCTTCCTATATCAGTTCCTTTATTTATTTTT
ATTTTCCTTTCCCTTATATCTCATCCTTCTCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_j12.g1 MSMg01no415_j12.g1 CHROMAT_FILE:
MSMg01no415_j12.g1 PHD_FILE: MSMg01no415_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:01 2005
         (335 letters)



>mm_chr19_14370466_14371205
          Length = 740

 Score =  542 bits (280), Expect = e-158
 Identities = 302/312 (96%), Gaps = 5/312 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccgccatcccagctctctgtggttctatggctgaaactgactctgtataggtcagtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tccgccatcccagctctctgtggttctatggctgaaactgactctgtataggtcagtttt 453

                                                                       
Query: 61  ctttcccctaaaatgtgctttctttgtcaaatgacgatgaagtctt-----taatctttt 115
           |||||||||||||||||||||||||||||||||| |||||||||||     |||||||||
Sbjct: 452 ctttcccctaaaatgtgctttctttgtcaaatgatgatgaagtctttaaaataatctttt 393

                                                                       
Query: 116 ctacaaagtaaagttctttttctgtctgtccaactcacttgtaagacccaggtttctgga 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctacaaagtaaagttctttttctgtctgtccaactcacttgtaagacccaggtttctgga 333

                                                                       
Query: 176 taataccatatttgggaaatttgattagggtcccccttcacatctgaagtttatataatc 235
           ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 332 taagaccatatttgggaaatttgattagggtcccctttcacatctgaagtttatataatc 273

                                                                       
Query: 236 tagtgttttcctttgagaaaagtagtatcaggcaggtgagatgggtgagagagctggctg 295
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tagtgacttcctttgagaaaagtagtatcaggcaggtgagatgggtgagagagctggctg 213

                       
Query: 296 ccaatgctgagg 307
           ||||||||||||
Sbjct: 212 ccaatgctgagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 740
Length adjustment: 9
Effective length of query: 326
Effective length of database: 731
Effective search space:   238306
Effective search space used:   238306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)