Query= MSMg01no416_c18.b1 MSMg01no416_c18.b1 CHROMAT_FILE:
MSMg01no416_c18.b1 PHD_FILE: MSMg01no416_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:44 2005
(571 letters)
>mm_chr19_10006339_10007309
Length = 971
Score = 1067 bits (552), Expect = 0.0
Identities = 561/564 (99%)
Strand = Plus / Plus
Query: 8 gaattcagtccctatcactgcataaaatcagacctggtggtgcgttgggatgtaggggtg 67
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcagtccctagcactgcataaaatcagacctggtggtgcgttgggatgtaggggtg 267
Query: 68 gaaggatcagaaatgtaaggtcatcctgagctacagtgtaagtttgggaccagtttggac 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gaaggatcagaaatgtaaggtcatcctgagctacagtgtaagtttgggaccagtttggac 327
Query: 128 tacgtaagaccctacctcaaaaaacaaaaagtgcccggggagtgctgactgaataaacgt 187
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 328 tacgtaagaccctacctcaaaaaacaaaaagtgcctggggagtgctgactgaataaacgt 387
Query: 188 gcactgtagacatgggcatgaccatgtcaaggaccacaattcctcagacctgggtgaggc 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gcactgtagacatgggcatgaccatgtcaaggaccacaattcctcagacctgggtgaggc 447
Query: 248 tcagagacatgacaaagctttctctggtgcaagtgtgagtgtaccaatgattgagcactg 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tcagagacatgacaaagctttctctggtgcaagtgtgagtgtaccaatgattgagcactg 507
Query: 308 tgtgtaaaaggaacaatcaccgagtgcatgccaaacactacaactacagcttctgtctcc 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tgtgtaaaaggaacaatcaccgagtgcatgccaaacactacaactacagcttctgtctcc 567
Query: 368 tggatgacagcagtctgagactgctcccctacagaaacctcctactaaacacttctcctt 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tggatgacagcagtctgagactgctcccctacagaaacctcctactaaacacttctcctt 627
Query: 428 aggttgtacctaataaaagttgagtttccaggcaacatagtaggtgctctccatcagagc 487
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aggttgtacctaataaaagctgagtttccaggcaacatagtaggtgctctccatcagagc 687
Query: 488 cagcactgcccacctgaccccagcttttctgtatttgtagctgtcgtttcttcattccca 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 cagcactgcccacctgaccccagcttttctgtatttgtagctgtcgtttcttcattccca 747
Query: 548 agtttctccagtcaggtttctcag 571
||||||||||||||||||||||||
Sbjct: 748 agtttctccagtcaggtttctcag 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_c18.g1 MSMg01no416_c18.g1 CHROMAT_FILE:
MSMg01no416_c18.g1 PHD_FILE: MSMg01no416_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:44 2005
(462 letters)
>mm_chr19_10153901_10154764
Length = 864
Score = 843 bits (436), Expect = 0.0
Identities = 455/462 (98%), Gaps = 2/462 (0%)
Strand = Plus / Minus
Query: 3 tcccatcccacttctccaatgctgggatgctggcttttggagggagattgtgggaggttg 62
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 664 tcccatcccacttctccaatgctgggatgttggcttttggagggagattgtgggaggttg 605
Query: 63 ctgatccaaatggcagtggcatttgaagatggcggctagcatcaccatagaaagtctctc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ctgatccaaatggcagtggcatttgaagatggcggctagcatcaccatagaaagtctctc 545
Query: 123 tcgggcattcaggtgatcacaagagaaaccccatgtttcctgggtttctggtttaacttt 182
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tcgggcattcagacgatcacaagagaaaccccatgtttcctgggtttctggtttaacttt 485
Query: 183 gtgcaagtgccccagagaccatgctggctgaaaggagccctggtctctacttgaagtgac 242
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gtgcaagtgcccaagagaccatgctggctgaaaggagccctggtctctacttgaagtgac 425
Query: 243 agtccagcctatctc--gagagccccaatcatcccaacaggaattgattcctgacaaggc 300
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 agtccagcccatctcaagagagccccaatcatcccaacaggaattgattcctgacaaggc 365
Query: 301 ctttatctcagtgtagatgaccagagcagaccagccacaagggcatttgactcacagaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ctttatctcagtgtagatgaccagagcagaccagccacaagggcatttgactcacagaaa 305
Query: 361 tgttaagagcagacttccaccatctggtcatatttatgatttctgggagggcgttctgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tgttaagagcagacttccaccatctggtcatatttatgatttctgggagggcgttctgag 245
Query: 421 tttgttttatgtggcagtatgcattcagtttcttttcggttt 462
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tttgttttatgtggcagtatgcattcagtttcttttcggttt 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 864
Length adjustment: 10
Effective length of query: 452
Effective length of database: 854
Effective search space: 386008
Effective search space used: 386008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
