BAC Information

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BAC

Clone NameMSMg01-416D15
Chromosome19 (Build37)
Map Location 50,296,336 - 50,485,902
singlet/doubletdoublet
Overlap geneSorcs1
Upstream geneLOC629448, Siah1-ps1, EG433251
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416D15.T7 (MSMg01no416_d15.b1)MSMg01-416D15.TJ (MSMg01no416_d15.g1)
ACCAG512095AG512096
length692726
length of high quality
(start - end)		328 (303 - 630)593 (76 - 668)
definitionCHROMAT_FILE: MSMg01no416_d15.b1 PHD_FILE: MSMg01no416_d15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:48 2005CHROMAT_FILE: MSMg01no416_d15.g1 PHD_FILE: MSMg01no416_d15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,485,575 - 50,485,902)(50,296,336 - 50,296,928)
sequence
CTCCTATATTCAGAGAATCCGCGGAATTCTTCCTTATCACATGAAGCATC
CCTGGGACCCCGGCCCCGGCCAATGGTGTACACTCACCCCCGCCCCCCAA
AAAAGTTTAAATAGTCTTTGTTCTCCCTGATTAGATGATCTGTTCCCTGA
AGCCTGTCTCCCACAGAAGTCTGTTTCTTGTGATCACTTGCTGCTGGAAA
TCTCCATCACCACCCCCCTCCCGTTTGTTCTTTCTTCCCTTCCCCTTTTA
GATCCATAGGTTGTGATTACTCCATGAAGGGAAGAGGAGCAGAGATTATT
TGACAGGCCTTCTCCTCCTCTCGGCGATGAACTACACCTCCTGAAACATT
GAGTCAGAGTTAAGTTGTCTATATTGAGGCATCTGTTCACAGCAAAATGT
TCCTTTTAACCCAAGAAGTATGGGTTACTGAGATGTTCTAATGAACGTGA
GTTTGGGAAGAAAATGTATCATACATGGCACAAAAGGATGAATCCTAGAA
TTGGGAATACATATTGTACTGTATTGGCCAGGGCAGTCATGGCTTTGTGA
CGTTGTATTGATGTTCTGGACTTTTCTCCCCAGGGTAATTTATTAAACTC
CTGTTACTGTAGGCAGCCTTCTGTTTTCAGCTCAGTTGTCCACAAAGGAA
CCTAAAACCCCATATAACTGCAGATATCTCTGATGGCTGGCA

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACCCCTGACCTCCAAAGCATGTAT
CCCCATAACCTTGCACATACACACATACCCCTCTGTCTCTGTCTCTCACA
CACACATACAAACACACATACACACACATAAACACACATGCTAAATGTTT
AATGGCAGCAATATAGTGACAAGAAATGACATTCTATCAAAAATGCATTG
TGTTATAGGAAAACAAGTCCGGTGTATGATCAGAAGGAACTGTGTCAGAG
TAACATCATCATCCAAGGTTGGCCCCTGAAGCCTACTACCACAGAAACTC
ACCCAGTGCTGTTGAGGTAACTCTGTCCCAAGCTGCAGTCTTTTGACAGT
GAGGATGGGTTGAACCAAAATGCTGGCAGGCATTGTCCATTACTATGTCT
CTCATAGCCATAGTCACTGTTGGGGACATACCCAAGACGAAACATTTACC
AGATGGCAAACTTATTCAGAACTATTTCATAGTAGTTGACAACCAACTTC
TAATCAGTCAATAAAATAAGCATTGCCTAAATGCTTAAGTCTTCTAGGAC
TTAAAAGTTTTTCTCTATACATTATCTATTACCCATGAAAATATCTTATA
GAACCAATATTCCCCTTTTGATGCCTTCAAGGTGAGAAGAATGACTTTGG
TCTCATGTAATGAGAAAGAGTAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_d15.b1 MSMg01no416_d15.b1 CHROMAT_FILE:
MSMg01no416_d15.b1 PHD_FILE: MSMg01no416_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:48 2005
         (328 letters)



>mm_chr19_50485375_50486102
          Length = 728

 Score =  549 bits (284), Expect = e-161
 Identities = 317/328 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaggccttctcctcctctcggcgatgaactacacctcctgaaacattgagtcagagtta 60
           |||| ||||||||||||||| |||||||||||||||| |||||||| |||||||||||||
Sbjct: 528 acagcccttctcctcctctcagcgatgaactacaccttctgaaacactgagtcagagtta 469

                                                                       
Query: 61  agttgtctatattgaggcatctgttcacagcaaaatgttccttttaacccaagaagtatg 120
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 468 agttgtctatattgaggcatctgttcacattaaaatgttccttttaacccaagaagtatg 409

                                                                       
Query: 121 ggttactgagatgttctaatgaacgtgagtttgggaagaaaatgtatcatacatggcaca 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ggttgctgagatgttctaatgaacgtgagtttgggaagaaaatgtatcatacatggcaca 349

                                                                       
Query: 181 aaaggatgaatcctagaattgggaatacatattgtactgtattggccagggcagtcatgg 240
           |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 348 aaaggatgaatcttagaattgggaatacatatcgtactgtattggccagggcagtcatgg 289

                                                                       
Query: 241 ctttgtgacgttgtattgatgttctggacttttctccccagggtaatttattaaactcct 300
           ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 288 ctttgtgacattgtattgatgttctggacttttctacccagggtaatttattaaactcct 229

                                       
Query: 301 gttactgtaggcagccttctgttttcag 328
           ||||||||||||||||||||||||||||
Sbjct: 228 gttactgtaggcagccttctgttttcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no416_d15.g1 MSMg01no416_d15.g1 CHROMAT_FILE:
MSMg01no416_d15.g1 PHD_FILE: MSMg01no416_d15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:48 2005
         (593 letters)



>mm_chr19_50296136_50297128
          Length = 993

 Score = 1139 bits (589), Expect = 0.0
 Identities = 592/593 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacccctgacctccaaagcatgtatccccataaccttgcacatacacacatacccctctg 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacccctggcctccaaagcatgtatccccataaccttgcacatacacacatacccctctg 260

                                                                       
Query: 61  tctctgtctctcacacacacatacaaacacacatacacacacataaacacacatgctaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctctgtctctcacacacacatacaaacacacatacacacacataaacacacatgctaaa 320

                                                                       
Query: 121 tgtttaatggcagcaatatagtgacaagaaatgacattctatcaaaaatgcattgtgtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtttaatggcagcaatatagtgacaagaaatgacattctatcaaaaatgcattgtgtta 380

                                                                       
Query: 181 taggaaaacaagtccggtgtatgatcagaaggaactgtgtcagagtaacatcatcatcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggaaaacaagtccggtgtatgatcagaaggaactgtgtcagagtaacatcatcatcca 440

                                                                       
Query: 241 aggttggcccctgaagcctactaccacagaaactcacccagtgctgttgaggtaactctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggttggcccctgaagcctactaccacagaaactcacccagtgctgttgaggtaactctg 500

                                                                       
Query: 301 tcccaagctgcagtcttttgacagtgaggatgggttgaaccaaaatgctggcaggcattg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcccaagctgcagtcttttgacagtgaggatgggttgaaccaaaatgctggcaggcattg 560

                                                                       
Query: 361 tccattactatgtctctcatagccatagtcactgttggggacatacccaagacgaaacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccattactatgtctctcatagccatagtcactgttggggacatacccaagacgaaacat 620

                                                                       
Query: 421 ttaccagatggcaaacttattcagaactatttcatagtagttgacaaccaacttctaatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaccagatggcaaacttattcagaactatttcatagtagttgacaaccaacttctaatc 680

                                                                       
Query: 481 agtcaataaaataagcattgcctaaatgcttaagtcttctaggacttaaaagtttttctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtcaataaaataagcattgcctaaatgcttaagtcttctaggacttaaaagtttttctc 740

                                                                
Query: 541 tatacattatctattacccatgaaaatatcttatagaaccaatattccccttt 593
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatacattatctattacccatgaaaatatcttatagaaccaatattccccttt 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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