Query= MSMg01no416_f12.b1 MSMg01no416_f12.b1 CHROMAT_FILE:
MSMg01no416_f12.b1 PHD_FILE: MSMg01no416_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:56 2005
(586 letters)
>mm_chr19_19176383_19177367
Length = 985
Score = 1017 bits (526), Expect = 0.0
Identities = 565/578 (97%), Gaps = 7/578 (1%)
Strand = Plus / Plus
Query: 12 gaattctccccatgtcc-gaccgacctgcttttcagcttcatgggctcagaaactcgatc 70
|||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gaattctcccca-g-cctgaccgacctgcttttcagcttcatgggctcagaaactcgatc 269
Query: 71 tcaccagtgtttcagagtggactaaacactgggatgaggactcacaattacttaactaaa 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tcaccagtgtttcagagtggactaaacactgggatgaggactcacaattacttaactaaa 329
Query: 131 gctcacagagctaatgcataagataaggactaccaaactgtcatttcaaaatgaggggcc 190
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 330 gctcacagagctaatgcataagataaggactaccaaactgtcatttcaaaatgagggg-c 388
Query: 191 ttgactgtggagactacctcagggggccttcagccactgcctacaaaactctcttaccta 250
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ttgactgtgaagactacctcagggggccttcagccactgcctacaaaactctcttaccta 448
Query: 251 ggtggattttgtcttggtatctggtaatctaatatactccctagagtgatatcactactt 310
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 449 ggtggattttgtcttggtatctggtaatctaagatactccctagagtggtatcactactt 508
Query: 311 tcagataatagcttaaacattaaagaaaatgaaattcaatacggtcagctatgtccttat 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tcagataatagcttaaacattaaagaaaatgaaattcaatacggtcagctatgtccttat 568
Query: 371 ttggaaaaaagaatttcatttattaaaaacgagtatatgtatactgtactacagtatttt 430
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 569 ttggaaaaaagaatttcatttattaaaaacaagtatatgtatactgtactacagtatttt 628
Query: 431 cacttatgttttttctctgtggtacttcaaaaacaagtatcacattacacacatatgtat 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 cacttatgttttttctctgtggtacttcaaaaacaagtatcacattacacacatatgtat 688
Query: 491 gcaacaacaataatcaaagaaaaagagattcaat-ggggggggcgct-gagcagtgagtg 548
|||||||||||||||||||||||||||||||||| |||||||| | | ||||||||||||
Sbjct: 689 gcaacaacaataatcaaagaaaaagagattcaattgggggggggg-tcgagcagtgagtg 747
Query: 549 gtaatgaaatgggtggggctagaaagaggagcagaagg 586
||||||||||||| ||||||||||||||||||||||||
Sbjct: 748 gtaatgaaatgggcggggctagaaagaggagcagaagg 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 985
Length adjustment: 10
Effective length of query: 576
Effective length of database: 975
Effective search space: 561600
Effective search space used: 561600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_f12.g1 MSMg01no416_f12.g1 CHROMAT_FILE:
MSMg01no416_f12.g1 PHD_FILE: MSMg01no416_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:57 2005
(514 letters)
>mm_chr19_19322291_19323210
Length = 920
Score = 741 bits (383), Expect = 0.0
Identities = 503/595 (84%), Gaps = 83/595 (13%)
Strand = Plus / Minus
Query: 2 cctataccctcttcttcacctgttagagataaataaaatgaagtcagatttatagaaatg 61
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 603 cctataccctcttcttcacctgttagagataaataaaatgaagtcagatttgtagaaatg 544
Query: 62 gtaatagatttgggcttttagctcttggttaagttcagcacta------gaatttgaagt 115
||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 543 gtaatagatttgggcttttagctcttggttaagttcagcactagaatttgaatttgaagt 484
Query: 116 tacccaggccaaaacttgatttatgtgatgaagcaggtgatattcttagttgataaaatg 175
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tacccaggccaaaacttggtttatgtgatgaagcaggtgatattcttagttgataaaatg 424
Query: 176 attcaaactagtactctagagtgagtatgttgaatttaatttttagttattatacaagtg 235
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 423 attcaaattagtactctagagtgagtatgttgaatttaatttttagttattgtacaagtg 364
Query: 236 tgtgtgtccttattgatcaaaccaaagtgcttaatcatacatatgaccaagctgagttaa 295
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 cgtgtgcccttagtgatcaaaccaaagtgcttaatcatacatatgaccaagctgagttaa 304
Query: 296 atgattcagttccttgctgaatttctcatctaggtagaagactgataagagtcttaagtt 355
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 atgatccagttccttgctgaatttctcatctaggtagaagactgataagagtcttaagtt 244
Query: 356 cctcattcaaagctgtcctacacaatatatatatatg-a--------------------- 393
||||||||||||||||||||||||||||||||||||| |
Sbjct: 243 cctcattcaaagctgtcctacacaatatatatatatgtatatatatgtatatatacatat 184
Query: 394 ------------------------------------------------atatgaa----- 400
|||||||
Sbjct: 183 gtatgtatatatatatatatatatatatatgtatatatatatatatatatatgaatctga 124
Query: 401 -cagtaagatacttctttttcactgtaggttctggaggcttcctccacaattgatgtctt 459
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 123 acagtaagatacttctttttcactgtaggttctggaagcttcctccacaattgatgtctt 64
Query: 460 cttttatgcatttgagacaaatgaatatattgttccaaaaaaaaaaaaaaagaga 514
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 63 cttttatgcatttgagacaaatgaatatattgttccaaaaaaaaaaaaaa-gaga 10
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 920
Length adjustment: 10
Effective length of query: 504
Effective length of database: 910
Effective search space: 458640
Effective search space used: 458640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
