Query= MSMg01no417_b02.b1 MSMg01no417_b02.b1 CHROMAT_FILE:
MSMg01no417_b02.b1 PHD_FILE: MSMg01no417_b02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:50 2005
(545 letters)
>mm_chr19_23548101_23549045
Length = 945
Score = 946 bits (489), Expect = 0.0
Identities = 528/541 (97%), Gaps = 1/541 (0%)
Strand = Plus / Plus
Query: 5 gaattcacattcttcttattgtcccatgaaacgttctctacaatagatcatgtataaggt 64
||||||| ||||||||||| ||||||||||| ||||||| |||||||||||||||||||
Sbjct: 206 gaattcatattcttcttatcatcccatgaaactttctctaaaatagatcatgtataaggt 265
Query: 65 cagacagcaagtcttaacaaatacaggaaaatggaaataacttcttatatcttatctgat 124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cagacggcaagtcttaacaaatacaggaaaatggaaataacttcttatatcttatctgat 325
Query: 125 cataatagaataacaacaaaagaaactacacaaactcatggagattaaagaataaaaacc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cataatagaataacaacaaaagaaactacacaaactcatggagattaaagaataaaaacc 385
Query: 185 taaagctagcatcatgataaaatagagaaaaatctcaaagcagtcccacaaagttaagga 244
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 386 taaagctagcatcatgataaaatagagaaaa-tctcaaagcagtcccacaaagttaagga 444
Query: 245 atacttgacacaatacttgaagccttagctatggcagcaacattaggaagtcaagtggat 304
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 445 atacttgacacaatacttgaagccttagctatggcaacagcattaggaagtcaagtggat 504
Query: 305 acaacaactgaagtcacagagtttcccagggctcccttggtctgaatactcttcaggatt 364
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 505 acaacaactgaagtcatagagtttcccagggttcccttggtctgaatactcttcaggatt 564
Query: 365 taaagaagtgaaaatatgactggcctaaaccaagaagtgctagaatgtctccctccatct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaagaagtgaaaatatgactggcctaaaccaagaagtgctagaatgtctccctccatct 624
Query: 425 gcccaaaaccagaacaatgctgccaatagtccctagaggtcactgtgaccttcatgccac 484
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 625 gcccaaaaccagaacaatgctgccaatagttcctagaggtcactgtgaccttcatgccac 684
Query: 485 attgcacggagtcatgtcagaccactcacctcacgtgctccttctttctgttcataatgc 544
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 685 attgcacggagtcatgtcagaccactcacctcacatgctccttctttctgttcataatgc 744
Query: 545 c 545
|
Sbjct: 745 c 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_b02.g1 MSMg01no417_b02.g1 CHROMAT_FILE:
MSMg01no417_b02.g1 PHD_FILE: MSMg01no417_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:50 2005
(458 letters)
>mm_chr19_23616913_23617770
Length = 858
Score = 808 bits (418), Expect = 0.0
Identities = 448/458 (97%), Gaps = 1/458 (0%)
Strand = Plus / Minus
Query: 1 caacccttgcttcccagcctgacactgtgccagagattctgtctagggacattaagcaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 caacccttgcttcccagcctgacactgtgccagagattctgtctagggacattaagcaag 448
Query: 61 aaaaagaattagaaaggaagaattcaatatcgctattcacaaatagcatgtgcttatata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaaaagaattagaaaggaagaattcaatatcgctattcacaaatagcatgtgcttatata 388
Query: 121 cagaaaattttagagaatctatcaaaagctattaggactaaagcaaagtcaattttcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cagaaaattttagagaatctatcaaaagctattaggactaaagcaaagtcaattttcaga 328
Query: 181 acacaaaccagagttaaaaaattttatgtatgtttttgtgtgttgtattgatgtgggtgt 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 327 acacaaaccagagttaaaaaattttatgtatgtttttgtgtgttatattgatgtgtgtgt 268
Query: 241 gagagtgccactagaggtttgtggagatcggagaacaactttctgaattgggtccttttc 300
||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||
Sbjct: 267 gagagtgccactagaggtttgtggagatcagagaacagctttctgaattgggcccttttc 208
Query: 301 ttccatcacgggactcaggggcttaaacccagccttgcatagcaaacacctttatcctct 360
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ttccaccatgggactcaggggcttaaacccagccttgcatagcaaacacctttatcctct 148
Query: 361 gagccatctcggtggccttcagctttacatttgcagaagcacaatgaggcaacctgaaaa 420
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 147 gagccatctcgctggccttcagctttacatttgcagaagcacaatga-gcaacctgaaaa 89
Query: 421 tgaactcaagaaaagaactccattcaagattgcatcca 458
||| ||||||||||||||||||||||||||||||||||
Sbjct: 88 tgagctcaagaaaagaactccattcaagattgcatcca 51
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space: 379904
Effective search space used: 379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
