Query= MSMg01no417_o23.b1 MSMg01no417_o23.b1 CHROMAT_FILE:
MSMg01no417_o23.b1 PHD_FILE: MSMg01no417_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:59 2005
(546 letters)
>mm_chr19_28145389_28146331
Length = 943
Score = 909 bits (470), Expect = 0.0
Identities = 519/536 (96%), Gaps = 3/536 (0%)
Strand = Plus / Plus
Query: 11 ttctttcttcctctttttcttttcttttaatctgtttgagaatgtatcgtcagatcatac 70
||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 211 ttctttctt--tctttttcttttcttttaatatgtttgagaatgtatcctcagatcatac 268
Query: 71 tctggcacctagcaggaagtgcctgttgctgagtgtgcagttctagttttgtagcaccca 130
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 269 tctggcacctagcaggaagtgcctgttgctgagtgtgcagttctagtttcatagcaccca 328
Query: 131 cccctcggtggcattctcctgcatgagtggattttctctatcacgtgtttatattgagga 190
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||
Sbjct: 329 cccctcggtggcattctcctgcgtgagtggattttctttatcacgtgtttatattgaaga 388
Query: 191 gctgagaatattttatcatatttttttttgttcatgtcacggttgttgtcatttctccca 250
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 389 gctgagaatattttatcatatttttttttgtccatgtcacggttgttgtcatttctccca 448
Query: 251 ttttttttcctttgttatttctgttatactaacaatttagggatattcactgccaaggcc 310
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 -tttttttcctttgctatttctgttatactaacaatttagggatattcactgccaaggcc 507
Query: 311 aaccatcttagactcttcctttctgtaattctttttttgtttgtttatttgtttgtttgt 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aaccatcttagactcttcctttctgtaattctttttttgtttgtttatttgtttgtttgt 567
Query: 371 ttcaaggcagggtttctctgtatagccctggctgtcctagaactcactttgtagaccatg 430
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tttgaggcagggtttctctgtatagccctggctgtcctagaactcactttgtagaccatg 627
Query: 431 ctggccttgaactcagaaatctgcctgcctctgccttccgagtgctgggattaaaggtgt 490
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 628 ctggccgtgaactcagaaatctgcctgcctctgcctcccgagtgctgggattaaaggtgt 687
Query: 491 gcaccaccacacccagctcctttctgtaattcttatcacaaacatatttttgtcat 546
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gcgccaccacacccagctcctttctgtaattcttatcacaaacatatttttgtcat 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 943
Length adjustment: 10
Effective length of query: 536
Effective length of database: 933
Effective search space: 500088
Effective search space used: 500088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_o23.g1 MSMg01no417_o23.g1 CHROMAT_FILE:
MSMg01no417_o23.g1 PHD_FILE: MSMg01no417_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:59 2005
(162 letters)
>mm_chr19_28318976_28319537
Length = 562
Score = 306 bits (158), Expect = 6e-88
Identities = 158/158 (100%)
Strand = Plus / Minus
Query: 1 ttcatatctgtaccctacttctacttaaacgtaggtcatggatgttatctctttcagcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttcatatctgtaccctacttctacttaaacgtaggtcatggatgttatctctttcagcac 299
Query: 61 tgttttggcctaaagatttaaagttaaaatccttgggaagattgtttggtgaaatggaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgttttggcctaaagatttaaagttaaaatccttgggaagattgtttggtgaaatggaat 239
Query: 121 gggaacatccttgtggagatggggtggggtgggggagg 158
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gggaacatccttgtggagatggggtggggtgggggagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space: 85316
Effective search space used: 85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
