Query= MSMg01no418_k07.b1 MSMg01no418_k07.b1 CHROMAT_FILE:
MSMg01no418_k07.b1 PHD_FILE: MSMg01no418_k07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:54 2005
(575 letters)
>mm_chr19_21872707_21873681
Length = 975
Score = 1067 bits (552), Expect = 0.0
Identities = 570/576 (98%), Gaps = 2/576 (0%)
Strand = Plus / Minus
Query: 1 attcaacagacctga-cacaataaagcaagtggaatcaaactaccatgtaaaggattcca 59
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 attcaacagacctgagc-caataaagcaagtggaatcaaactaccatgtaaaggattcca 717
Query: 60 atggaattagcacgctagagattccaaaaggaaaaaggaaacccatgcaagcctacccct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 atggaattagcacgctagagattccaaaaggaaaaaggaaacccatgcaagcctacccct 657
Query: 120 cagggcttttatgacaggctttccatggcacactgccctaacctttcagctcctcagcgg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 cagggcttttatgacaggctttccatggcacactgccctaacctttcagctcctcagcgg 597
Query: 180 gctccattagcctagccttcagtaatgttctagttcattatgctcagaagataatggtga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gctccattagcctagccttcagtaatgttctagttcattatgctcagaagataatggtga 537
Query: 240 gaggaaggctcttcagacgaaagttatctttattctgcccattcttttgcagaacggcat 299
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 536 gaggaaggctcttcagacgaaagttatcttcactctgcccattcttttgcagaacggcat 477
Query: 300 ctctgtgctttcccctagctttagagacaattcacaacgggcttcatcaacccaaaccaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 476 ctctgtgctttcccctagctttagagacaattcacaacgggcttcatcaacccaagccaa 417
Query: 360 gatgttctgtgtacatctagtagttagacccagggttcagacaagaggctatctgatgca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gatgttctgtgtacatctagtagttagacccagggttcagacaagaggctatctgatgca 357
Query: 420 ccaatgtaaaagacctttagtggggtggtcatgaagctggctaaaacagcatcggctgcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ccaatgtaaaagacctttagtggggtggtcatgaagctggctaaaacagcatcggctgcc 297
Query: 480 tgtggttcttggttcaccacctctgcagtcacaggatacaggctctaacacagagctggg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tgtggttcttggttcaccacctctgcagtcacaggatacaggctctaacacagagctggg 237
Query: 540 aggggaagaacaaggtctacctacctgtagcccaga 575
||| ||||||||||||||||||||||||||||||||
Sbjct: 236 aggtgaagaacaaggtctacctacctgtagcccaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_k07.g1 MSMg01no418_k07.g1 CHROMAT_FILE:
MSMg01no418_k07.g1 PHD_FILE: MSMg01no418_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:54 2005
(359 letters)
>mm_chr19_21701431_21702189
Length = 759
Score = 648 bits (335), Expect = 0.0
Identities = 350/355 (98%), Gaps = 1/355 (0%)
Strand = Plus / Plus
Query: 5 gattatttgatcagttcttgtacagttattgggggtggggaggggggctatccctaatgt 64
|||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct: 205 gattatttgatcagttcttgtatagttactgggggtggggagggggcctatccctaatgt 264
Query: 65 atatttctctttgctggactgttagttcccacctctgctcctcaatacttgctgtttgaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atatttctctttgctggactgttagttcccacctctgctcctcaatacttgctgtttgaa 324
Query: 125 tttcacccggttatttctgctctagcagtctgtcctgggcgtgcatttcactcaggcatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttcacccggttatttctgctctagcagtctgtcctgggcgtgcatttcactcaggcatg 384
Query: 185 tgttcctggtccatctcgtctaatggagaccttctcttctatcttcttcctcctcctttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgttcctggtccatctcgtctaatggagaccttctcttctatcttcttcctcctcctttc 444
Query: 245 tcctcccttgccttcttcctcagggtccgttcctgtaacccacagcctggtaactgaagc 304
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 tcctcccttgccttcttcctcagggtc-gttcctgtaacccacagcctggtaactgaagc 503
Query: 305 tccgcgtcttctattctccccagtaactgactgtagccattttatttaaccaata 359
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 504 tccgcgtcttctattctctccagtaactgactgtagccattttatttaaccaata 558
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space: 262500
Effective search space used: 262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
