BAC Information

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BAC

Clone NameMSMg01-419A13
Chromosome19 (Build37)
Map Location 26,387,777 - 26,388,292
singlet/doubletsinglet
Overlap gene1700048O14Rik
Upstream geneAnkrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806
Downstream geneLOC100041846, LOC100041857, Smarca2, Gm815, LOC100042576, Vldlr, LOC100042588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419A13.T7 (MSMg01no419_a13.b1)MSMg01-419A13.TJ (MSMg01no419_a13.g1)
ACCAG514230AG514231
length1,076755
length of high quality
(start - end)		---536 (67 - 602)
definitionCHROMAT_FILE: MSMg01no419_a13.b1 PHD_FILE: MSMg01no419_a13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:24 2005CHROMAT_FILE: MSMg01no419_a13.g1 PHD_FILE: MSMg01no419_a13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAATTTGATTCNTCCCTCCATGTNCAGNNNNNNNNNNNNNNNNNTGTT
TGCCAGAGAGGAGCGCGCAGNNGAATGNNTGTTTACTANACGTTCACNGT
GNAGANGCTTGGNAGACCNAGTATCGTTTCAATAAACTGGAAGTTCATTC
TTTCCCTCCTCTCCAGCCCCTACCTAATTAACTTAAATTCCNCTCCATTT
CTCGCCAGGGAAAAGAAAGGACTCAAGTGGAAAAGAGCCTAATATTAAGC
CTCGGCCCATACAATCCGTGTGTGGGCCACCCGATCGACATATACCTTTC
ACCTAACCCAGCAATTCCTCTCCCCTACCTCCCACATAAGCAAGCTTTTT
TCAAGGCGAACCCAAATCCGCGGGCCCGCCTGTGGCTAGAATCTCTCCAT
TCACCCGAGAGGGGGCCCCGACAAGCCTGGCTTTATTTTTTTTTTTTTAG
CCAGAAGGAGGCCAACGACCAAACATTGGGGNCTGCCCTGGGTTTTTTCT
CCCCCCACCCATCCCGGTGTACGGAGAGGGGCGCTTTTATTACCCGCTTC
CTCTTTTCCTTCCCTCGCCCGCGGCGCGGTGGCGTTTGGGAGGATGGACA
AACCACCTATATTTAACCCTCTCCACCCTCCGCTTTTCACCTTAATATTA
CCACACCCGCCCACACACCCCTATCTTCGTGTTTCCTCCCTTTATGGCAG
TGGCAACCAACCCTCCTTTCCTTTTGCTCCGGCTCCGCGCCCTCTTTTTT
TCTCCGCCCCCGCGTCCGTGGGTCCATTACAATTATTAATTTCGCCGCGT
GGCCCCTATACAATTATATTTTTCGCCCCCCGCCCGTATGGGTTTGTTCT
CCGCCTCGCNTTCATCTTTCTTGTTCGCCGCGACTTTCTCACGACCGCTC
CACTCTTTATATATTTNCACCCTCTCTCCGTGGTGCCGCGGGGGNGAACG
CCCACACCAAAATATATACTACACCCTATTTGCGCGCGTATGTTCCCACG
GTTATTTAACNTCACACCGCGCACACACAATTTATTATTCTCGCGCCTTT
TAAATATATCTTAATTCCCATCGCCN

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTAATTTAATCTTAAGCGCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTTCTCTCTCTTGC
CACTATAGCTACTCAATAGACGGGCAAAGGAAAATCTCAGGGTTTGTGTG
TCAAGTAGGAAACAGCTAAGAGGAAAAATAAAAATAATGCTGAAGAAATT
AATGTCTCATGTGTCCCAGAGAGGTTAAGGGTACACACTAGAGACCAATA
GGAAGTCCAGAGTGGAGGAGAGCTGGGGATAGAGAAGAGGGATAGCTAGC
ATAAGGCATGATTTTATGGATGCTCATGGACATTACTGTCTCGGTGACTA
TAGGTCATCAGGTTTAAAGAGAATACCATGATTAGCATTGACCATTAGGT
TTCATTGTAATCAGTTGCTTTGGGGTGTATTATGTTTGAGGTCAGTGAAG
TGAAGCACATCTGGGTGATACCTCAGTGTTCTTGGGAAAATTTTAACTGC
ACCAAGAATCTGATTGAATTTCAAATAACTCAGGTCAGTATCAGAAATTT
TACTAAAATAAGAGTAACCCATTGCTCTGCTTCCTGGGATATGGTTAGNA
ATATGGGGGGGCCAGTCACCTACTGTGCCTGGGAGATGGGGTTGTGACAT
TAAAACTATACTTTAACCCGGCCCTGGTCACCCCAGAGAACCAAAATTTG
TCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_a13.g1 MSMg01no419_a13.g1 CHROMAT_FILE:
MSMg01no419_a13.g1 PHD_FILE: MSMg01no419_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:24 2005
         (536 letters)



>mm_chr19_26387495_26388430
          Length = 936

 Score =  946 bits (489), Expect = 0.0
 Identities = 510/517 (98%), Gaps = 1/517 (0%)
 Strand = Plus / Minus

                                                                       
Query: 20  ctctctctctctctctctctctctctctctctctctctctctcttctctctcttctctct 79
           ||||| ||||||||||||||||||||| ||||||||||||||||| |||||| |||||||
Sbjct: 798 ctctccctctctctctctctctctctccctctctctctctctcttttctctc-tctctct 740

                                                                       
Query: 80  cttgccactatagctactcaatagacgggcaaaggaaaatctcagggtttgtgtgtcaag 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cttgccactatagctactcaatagacgggcaaaggaaaatctcagggtttgtgtgtcaag 680

                                                                       
Query: 140 taggaaacagctaagaggaaaaataaaaataatgctgaagaaattaatgtctcatgtgtc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 taggaaacagctaagaggaaaaataaaaataatgctgaagaaattaatgtctcatgtgtc 620

                                                                       
Query: 200 ccagagaggttaagggtacacactagagaccaataggaagtccagagtggaggagagctg 259
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 619 ccagagaggttaagggtacacactagagaccaacaggaagtccagagtggaggagagctg 560

                                                                       
Query: 260 gggatagagaagagggatagctagcataaggcatgattttatggatgctcatggacatta 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gggatagagaagagggatagctagcataaggcatgattttatggatgctcatggacatta 500

                                                                       
Query: 320 ctgtctcggtgactataggtcatcaggtttaaagagaataccatgattagcattgaccat 379
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttgtctcagtgactataggtcatcaggtttaaagagaataccatgattagcattgaccat 440

                                                                       
Query: 380 taggtttcattgtaatcagttgctttggggtgtattatgtttgaggtcagtgaagtgaag 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 taggtttcattgtaatcagttgctttggggtgtattatgtttgaggtcagtgaagtgaag 380

                                                                       
Query: 440 cacatctgggtgatacctcagtgttcttgggaaaattttaactgcaccaagaatctgatt 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cacatctgggtgatacctcagtgttcttgggaaaattttaactgcaccaagaatctgatt 320

                                                
Query: 500 gaatttcaaataactcaggtcagtatcagaaatttta 536
           |||||||||||||||||||||||||||||||||||||
Sbjct: 319 gaatttcaaataactcaggtcagtatcagaaatttta 283


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 86
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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