Query= MSMg01no419_n05.b1 MSMg01no419_n05.b1 CHROMAT_FILE:
MSMg01no419_n05.b1 PHD_FILE: MSMg01no419_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:29 2005
(362 letters)
>mm_chr19_48920967_48921726
Length = 760
Score = 605 bits (313), Expect = e-177
Identities = 355/381 (93%), Gaps = 21/381 (5%)
Strand = Plus / Plus
Query: 1 catgcagtttagtatctgtaccagtatatatctttcagaataaaagttagagaaatttaa 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 182 catgcagtttagtatctgtaccagtatatatctttcagagtaaaagttagagaaatttaa 241
Query: 61 ctcaataacttgttggaattcagctcaactaaggctcagacatatagaacagactcaaga 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctcaataacttgttggaactcagctcaactaaggctcagacatatagaacagactcaaga 301
Query: 121 gctgctgctggctctgataatatagggtggatgagactattgacgttaacatggagggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gctgctgctggctctgataatatagggtggatgagactattgacgttaacatggagggaa 361
Query: 181 a-------------------acaatgacatttgcacaaggaaaaacatctagagtatagt 221
| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 362 agaaccctggggctcccaaaacaatgacatttgcacaaggaaaaatatctagagtatagt 421
Query: 222 atatatccttaggctgccgacctaagtgatgtggatggtcaggatgaaactactagacag 281
| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aaa-a-ccttaggctgccgacctaagtgatgtggatggtcaggatgaaactactagacag 479
Query: 282 gggaggagtgcctgtcccaggagaatatggtagatgtggcaaatggcaagccaaagactc 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gggaggagtgcctgtcccaggagaatatggtagatgtggcaaatggcaagccaaagactc 539
Query: 342 catagcaagtaccattatgtc 362
|||||||||| ||||||||||
Sbjct: 540 catagcaagtcccattatgtc 560
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 760
Length adjustment: 9
Effective length of query: 353
Effective length of database: 751
Effective search space: 265103
Effective search space used: 265103
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no419_n05.g1 MSMg01no419_n05.g1 CHROMAT_FILE:
MSMg01no419_n05.g1 PHD_FILE: MSMg01no419_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:29 2005
(514 letters)
>mm_chr19_49115418_49116331
Length = 914
Score = 685 bits (354), Expect = 0.0
Identities = 381/398 (95%), Gaps = 14/398 (3%)
Strand = Plus / Minus
Query: 1 agccttaaaataaaataaataagcaaggctcaaagacagatagaccactggatatagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 agccttaaaataaaataaataagcaaggctcaaagacagatagaccactggatatagaag 355
Query: 61 gctcaagccagtccctcctttccaacatcccttttatacttcaggcacttgatgaattca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gctcaagccagtccctcctttccaacatcccttttatacttcaggcacttgatgaattca 295
Query: 121 taattatcccccaggcctttctcagacttccttgctctgttctccttattaccctcatta 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 taattatcccccaggcctttctcagacttccttgctctgttctccttattaccctcattt 235
Query: 181 cttatgttatggatatgtatgtataagagaggagagagagagagacagagagagagagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 cttatgttatggatatgtatgtataagagaggagagagagagagacagagagagagagag 175
Query: 241 acggagactgagacagaaagactcagagagagacagagacagagagagacagacagagac 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 acggagacagagacagaaagactcagagagagacagagacagagagagacagacagagac 115
Query: 301 agagacagagagacagagagagaca------------gacagagacagagagagagaga- 347
||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 114 agagacagagagacagagagagacatacagagacagagacagagacagagagagagagag 55
Query: 348 -aagagagagacagacagagacagagacagagacagag 384
|||||||||| ||||||||||||||||||||||||||
Sbjct: 54 aaagagagagagagacagagacagagacagagacagag 17
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 96
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
