BAC Information

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BAC

Clone NameMSMg01-420I05
Chromosome19 (Build37)
Map Location 12,549,068 - 12,549,535
singlet/doubletsinglet
Overlap geneDtx4
Upstream geneMs4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1
Downstream geneEG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420I05.T7 (MSMg01no420_i05.b1)MSMg01-420I05.TJ (MSMg01no420_i05.g1)
ACCAG515361AG515362
length745760
length of high quality
(start - end)
466 (65 - 530)44 (56 - 99)
definitionCHROMAT_FILE: MSMg01no420_i05.b1 PHD_FILE: MSMg01no420_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:23 2005CHROMAT_FILE: MSMg01no420_i05.g1 PHD_FILE: MSMg01no420_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGCTAAACGAANANGATAGGTCGNATATCCGGGGAANNAANNNCATNCT
TTCTTACAACCCGCACTCACTCACTACAAAGCCATGATGAGTTTATAGAT
CTGTGATAGCTTGTACCAAGAGCTGCATAAAATTGTCAATATTATATTCT
TTGCACTTACAAAGTAAAATCTTTAAACAAGGTTACAGTCTCAAGAGATG
AGGGATATTCAAAATTATAGACAAGCATTTGTATGGGTGGAAAGCTGTTA
CATCAGTCTTCATACACCACTCACCCCTTGGAGCCTGTGATAGCTCTGTC
AGTATGACATTTTTTTTTATCATACAGGAAGATAATCCCAATGATGGGTT
CATGGGATTACTGGGGAATTTTCTTGATTCTATTAACTGGGGTGGGAGGA
CCTGCCCACTGTGAGTGGCATTATTCCCTAGGAATGGGGAACTGTAATGT
GTAAGCGTGGAGACAACTAGTCTGTCATGCATGCATTAAATCATAGCTCT
CTGCTCTTGACTGTGGGATGTGATTATCTGATTTGGGTTCCTGCCGCTTT
GACTTCCCCACAAGGATGGACTATAACCTGGAATCATGAGCCAAATAAAC
TCCTTTCCCTTTCCGTTCTTCTTAAGGTATCTTACCATAATAGCAAGAAA
TGAGACTAAGACGGACACCAATTGGGAAGGCTAGAATCTTGTGGCCTTTT
TGCTTGTGCTATAAAAGAATTCTCATAGCTGGAGTGATTTACAAA
CTGGGGGCGCCTGGCTTCAAAAATAGGTGAACTATAGAAGGATTCCCGAA
ATCTATAGAACCTTTGATTTATCTAAATAACATTAATTCATGAAAATTCA
TCTTCATATTATCTTCAGGAAATCTGATCAATAGGGTGGGTTAATGCCCA
GGAATTATATATATTTGAGAGACGACGGANNNAAGGCATGGCGCTGCCGA
AAAACCTTGGAGGAAGAGCTCTTGTTTTCTTTCTAACCTTACTCTTTTTA
GAAAAATGTGAAAAAAAAGGGGCCCTCCCCCCGGGGGGAAATTCCCTTAT
AAAAGGTTTTCCCCCCACCAAAATTTTTTGTTTTTCNNNNNNNNCATGGT
TAATTATGTGGCGGTTTTTGTGGCGTTTGCCGGGGCACAAATTCTTTGGG
GGGCGCCGTCGCAACAACTTTCCTGGTGATCTTTAAAAAGGGGGCCTTCC
CCCCTTTTTTCACTCCCTCGTATTATTTTTCCTCCCCCCCCAGGTGGCTT
CTTCAATAAAAAAAAAATTTTGTGGGGGGGCGGGCGAAGGTAACCCAATT
TTCTTTTTTATTCCTCTTCCCTCCCTCTATCAAAACAAACATTACATATC
CCTTCTTTTTTTTCTCCTCCTTCTTTATATTTTCATCCATTTCCTCACCC
TTATTCCATTTCTTTCTCCCCTTCTTTCCCCTATCTTTCCTATATTTCTT
CCCTCCTCCCTCACTATTACTTTTCCCCTACTTCCTCACCCGTCCCCTAT
TTTTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_i05.b1 MSMg01no420_i05.b1 CHROMAT_FILE:
MSMg01no420_i05.b1 PHD_FILE: MSMg01no420_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:23 2005
         (466 letters)



>mm_chr19_12549037_12549904
          Length = 868

 Score =  801 bits (414), Expect = 0.0
 Identities = 454/468 (97%), Gaps = 2/468 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcactcactacaaagccatgatgagtttatagatctgt--gatagcttgtaccaagag 58
           |||||||||||||||||||||||||||||||| |||||||  || |||||||||||||||
Sbjct: 499 actcactcactacaaagccatgatgagtttattgatctgtgagagagcttgtaccaagag 440

                                                                       
Query: 59  ctgcataaaattgtcaatattatattctttgcacttacaaagtaaaatctttaaacaagg 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctgcataaaattgtcaatattatattctttgcacttacaaagtaaaatctttaaacaagg 380

                                                                       
Query: 119 ttacagtctcaagagatgagggatattcaaaattatagacaagcatttgtatgggtggaa 178
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttacagtctcaagagatgagagatattcaaaattatagacaagcatttgtatgggtggaa 320

                                                                       
Query: 179 agctgttacatcagtcttcatacaccactcaccccttggagcctgtgatagctctgtcag 238
           |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 319 agctgttacatcagtcttcataaaccattcaccccttggagcctgtgatagctctgtcag 260

                                                                       
Query: 239 tatgacatttttttttatcatacaggaagataatcccaatgatgggttcatgggattact 298
           |||||||   |||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tatgacacaatttagtatcatacaggaagataatcccaatgatgggttcatgggattact 200

                                                                       
Query: 299 ggggaattttcttgattctattaactggggtgggaggacctgcccactgtgagtggcatt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ggggaattttcttgattctattaactggggtgggaggacctgcccactgtgagtggcatt 140

                                                                       
Query: 359 attccctaggaatggggaactgtaatgtgtaagcgtggagacaactagtctgtcatgcat 418
           ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 attccttaggaatggggatctgtaatgtgtaagcgtggagacaactagtctgtcatgcat 80

                                                           
Query: 419 gcattaaatcatagctctctgctcttgactgtgggatgtgattatctg 466
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  gcattaaatcatagctctctgctcttgactgtgggatgtgattatctg 32


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 868
Length adjustment: 10
Effective length of query: 456
Effective length of database: 858
Effective search space:   391248
Effective search space used:   391248
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)