Query= MSMg01no421_b05.b1 MSMg01no421_b05.b1 CHROMAT_FILE:
MSMg01no421_b05.b1 PHD_FILE: MSMg01no421_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:06 2005
(536 letters)
>mm_chr19_48383109_48384042
Length = 934
Score = 971 bits (502), Expect = 0.0
Identities = 523/530 (98%), Gaps = 2/530 (0%)
Strand = Plus / Plus
Query: 7 gaattcctctttcatggtacagacggaggtgatttgctatgtacctttaaattgtgccca 66
|||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattc-tctttcatgggaaagacggaggtgatttgctatgtacctttaaattgtgccca 265
Query: 67 agaagttctcttttgttgttggtagttactgacccaatcccaggatagcttgtgcattca 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agaagttctcttttgttgttggtagttactgacccaatcccaggatagcttgtgcattca 325
Query: 127 gatttttttttcttagcaccctcctcccatgtaaaattgagcatgtcccttttttatttc 186
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gatttttttt-cttagcaccctcctcccatgtaaaattgagcatgtcccttttttatttc 384
Query: 187 agacagcgtctgcaaacccaagaatttgcctactctctacaaagagaacatcaaccctta 246
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 agacagcgtctgcaaacccaagaatttgcctacgctctacaaagagaacatcaaccctta 444
Query: 247 ggagacattatgaacaggagaactgaaataaccatttatcctggcatcactgagcagacc 306
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggagacattatgcacaggagaactgaaataaccatttatcctggcatcactgagcagacc 504
Query: 307 acagaccccatcccaagcctttcatttaagtgaccacagtggttctaagagtaatagcta 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acagaccccatcccaagcctttcatttaagtgaccacagtggttctaagagtaatagcta 564
Query: 367 caataatcatgaattctgatgatgatgatgccgttggttttgctcagtccatcatcacag 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caataatcatgaattctgatgatgatgatgccgttggttttgctcagtccatcatcacag 624
Query: 427 gggatcctcgcagccttgagctctgtgcttcacatccatagtgcgaatgaatgaatgaag 486
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 625 gggatcctcgcagccttgagctctgtgcttcacatccatagtgcgagtgaatgaatgaag 684
Query: 487 cagtcttctcttcaagttctttatttcttcaacagcgtcttgcaaaatag 536
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cagtcttctcttcaagttctttatttcttcaacagcgtcttgcaaaatag 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 934
Length adjustment: 10
Effective length of query: 526
Effective length of database: 924
Effective search space: 486024
Effective search space used: 486024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_b05.g1 MSMg01no421_b05.g1 CHROMAT_FILE:
MSMg01no421_b05.g1 PHD_FILE: MSMg01no421_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:06 2005
(500 letters)
>mm_chr19_48579186_48580084
Length = 899
Score = 951 bits (492), Expect = 0.0
Identities = 498/500 (99%), Gaps = 1/500 (0%)
Strand = Plus / Minus
Query: 1 agatggttctcctgcatcaagtgtgcatgagctctcgctttgtaattgcttattgatttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 agatggttctcctgcatcaagtgtgcatgagctctcgctttgtaattgcttattgatttc 818
Query: 61 tgcttagttgaaattagtatcaacccagtgccaagcactgtgttaggaaccagggagcct 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 817 tgcttagttgaaattagtatcaacccagtgccaagcactgtgttaggtaccagggagcct 758
Query: 121 ggacagataatacatggctcttgccccgggggcactcattgtttagcaggagagacaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ggacagataatacatggctcttgccccgggggcactcattgtttagcaggagagacaggg 698
Query: 181 aaataaatggccaagctgcagggagatgcatactaggagagaagataaacggggctctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 aaataaatggccaagctgcagggagatgcatactaggagagaagataaacggggctctgt 638
Query: 241 gaaagcaccaaggagggggacaatcaatcccagcataaatgtctcctgactcccaaaacc 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gaaagcaccaagga-ggggacaatcaatcccagcataaatgtctcctgactcccaaaacc 579
Query: 301 cagcagtagaagcagggctctggattggatgctagcacacagtgctagaggtagactata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cagcagtagaagcagggctctggattggatgctagcacacagtgctagaggtagactata 519
Query: 361 tgcaggcacagctggaagccatttagtcctgctgcagcaacagaagaagccaggagaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tgcaggcacagctggaagccatttagtcctgctgcagcaacagaagaagccaggagaaaa 459
Query: 421 tggaacacagaagctgagttcaggatggggcatccatgcccaggtgccatctggagcaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tggaacacagaagctgagttcaggatggggcatccatgcccaggtgccatctggagcaag 399
Query: 481 gaaagcaaatctgggaggct 500
||||||||||||||||||||
Sbjct: 398 gaaagcaaatctgggaggct 379
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 899
Length adjustment: 10
Effective length of query: 490
Effective length of database: 889
Effective search space: 435610
Effective search space used: 435610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
