Query= MSMg01no421_j04.b1 MSMg01no421_j04.b1 CHROMAT_FILE:
MSMg01no421_j04.b1 PHD_FILE: MSMg01no421_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:48 2005
(507 letters)
>mm_chr19_45802051_45802957
Length = 907
Score = 698 bits (361), Expect = 0.0
Identities = 380/389 (97%), Gaps = 5/389 (1%)
Strand = Plus / Minus
Query: 119 aatgctgcaaccctttacagttcctcatgctgtggtgaccaccagccataaaattatttt 178
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 907 aatgctgcaaccctttacagttcctcgtgctgtggtgaccaccagccataaaattatttt 848
Query: 179 gttgctcctgtagctgtgattttgctagtgttatggattgtaatgtaaatacctgacctg 238
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 847 gttgctcctgtagctgtgattttgctagtgttatggattgtaatgtaaat-----acctg 793
Query: 239 atatgcagaatatttgatatatgacccctatgaaaaagtcgtttgaccgccaaaggcctt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 atatgcagaatatttgatatatgacccctatgaaaaagtcgtttgaccgccaaaggcctt 733
Query: 299 gcaaaccaaaggttgagaacagctggcccgagagataggcctgcgagaccaggggatgga 358
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 732 gcaaaccaaaggttgagaacagctggcccgagagataggcctgcgagaccacgggatgga 673
Query: 359 actatcctggatccgattagaacggtcagcatcaacgtttgtgtgagtaggggagtccag 418
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 672 actatcctggatccgattagaatggtcagcatcaacgtttgtgtgagtaggggagtccag 613
Query: 419 cgggtgctttagaatgtcactctttggaccagtggcttctgtgggcagggactctggggg 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 612 cgggtgctttagaatgtcactctttggaccagtggcttctgtgggcagggactctgtggg 553
Query: 479 aggagctgggccacctgagtaagggctct 507
|||||||||||||||||||||||||||||
Sbjct: 552 aggagctgggccacctgagtaagggctct 524
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_j04.g1 MSMg01no421_j04.g1 CHROMAT_FILE:
MSMg01no421_j04.g1 PHD_FILE: MSMg01no421_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:48 2005
(398 letters)
>mm_chr19_45636012_45636809
Length = 798
Score = 667 bits (345), Expect = 0.0
Identities = 384/401 (95%), Gaps = 9/401 (2%)
Strand = Plus / Plus
Query: 1 ctgaggctttaaagctaacagctagggactt---aacatccacaggcaggtgcctgaagt 57
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 201 ctgaggctttaaagctaacagctag---ctttaaaacatccacaggcaggtgcctgaagt 257
Query: 58 ttacagaaattaaaatcaggtttcatttgctcctaccctacagcatttagggaacccatt 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttacagaaattaaaatcaggtttcatttgctcctaccctacagcatttagggaacccatt 317
Query: 118 gccatgtgccaaattctgtgctagagcagatagaaaaaacagacaatagcaaagtcaaaa 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 318 gccatgtgccaaattctgtgctagagcagatagaaaaaacagacaatagcaaagttaaaa 377
Query: 178 caaacaagaagacgacaaccatggcttatgctttcctgggatcataaaattatcaagaaa 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 caaacaagaagacgacaaccatggcttatgctttcctgggatcataaaattatcaagaaa 437
Query: 238 aaaatatgtaaggaaatagcagcttgtgttaaatagaggttgggatcttagaaaggcaag 297
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 438 aaaatatgtaaggaaatagcagcttgtattaaatagaggttgggatcttagaaaggcaag 497
Query: 298 gatagccccatgcctgccatctctgcactcaggaggtcaaggcaggagactttggaagga 357
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 498 gatagccccatgcctgccatctctgcactcaggaggtcaaggcaggagactcaggaagga 557
Query: 358 aggaaggaaggaaggaaggaaggaaggaagga---aggaag 395
| ||||||||||||||||| ||| |||| ||| ||||||
Sbjct: 558 atgaaggaaggaaggaagggagggaggagggagggaggaag 598
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space: 306921
Effective search space used: 306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
