XXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCTTTTG
TGTTTTGCAAGTACAGTGTGTCAAAGGATGCTCTGACAAATTGAACTTTG
CAGGGAGACTAAAGGGAAGCAAAGGAAGCTGCTAACCACTGAAAGTAATG
CACTTTCTTAATGACTTAGCAGGGGCTGGGCCCATCTTAGTAGTCTTCTC
CTGCCTTCAGCTGCAAACAGACAATGGAGCTCACTCTGGGAAACACATAA
TTGGTCTTTATCTTCTAGGATGAGCCAGTTTACCATAGACTTGCTTAATT
TTTGTCAATATAAAATCCTGCAACCTAAAATTTCAGAGCATTTTTCTTTC
TCTTCTTTTTTAAAATGAACTCTACTGGAAGTGTCTCAGGTTTATTCCAT
GTAAACTTGATATATACATGTCCTAAGGAAGGAGCAATCCCTAGCAGTAG
CTTCATCCCATGACTCCCCTGCAAGGAAACACCCCATGGCTTCCATTCAT
TTGATACCATTTAGCAATTCAATCCATACCTCGTTCTCTGCCTATATGTT
GGGTATACATACAGTAAAGGAACAATACAAGATAATGTGGATATATCATT
TTTCTCCTTCTGGAGTCCATCTACTGGCAGGAGAAAGAGCAATTCCATTC
TAATTATAGTTTACTGTCCTGCCTGATCACACTGCTGGTTGTAAGCCTAA
TTCAAACAACTTTGCATGAAAAAAGTTTGTGAGGAATAGG

ATAACAACATTAATGTTCTCCTTTTCTCCCACACAAACCCCCCCCCCCCC
ACAATTACCCAATAAANTGTCAGCTACCCCCACCCCACTAAACAAAAACA
CAAAAACAATAGTTNNCCTTCAAGTTTNTNTTTCTTCCTTNCTTCTCCCT
CCAGTCAGNCNCAGCCCNCCCCCNCCTCTTCTTCCTTTTCTTCCCCTTTC
TCTCCCCCCCCCCCCCTCACCCCTCCTACTTCCNNCCCTCCCTCTATTCC
CCTTTCTCCGCCTCCTCTCCTTCCCCCCTCCTTCGCTCCNCCACTCCCGC
CTCCACCTCCTCTTCCCCTATCTACTTCACATCACAAAAATAAACATAAT
TCTACAAACACCCTACCTCATCCTACAAACAAAATCCAACTATCTACAAC
AACAACAAAACAAAACAACAATCAAACCCCATCACCACCAACTAGCTCNC
CTCTAACTCTCTCTACATCCTTTCTACATATCACATACTACATACATACA
AACAACCACACCTTCCACCTCTTACACAACACAACAAACACTAAAATTTT
ATTTATATTNTAATTTTTTTTGTCCCCCCGGGGCCGGNGCCCCACAAAAA
ATTGTATGGAAAAAATNATTTTTCCCCCACCAAACAAATAAAAATAAAAA
AAAAACTCCTCCTTCTTTCTCCTGCCCCNTCCCCTTACCTCCTTAACTAA
TAATTAAAAAAAAGAAAAACACAGTCCTTCCCTCCCTCCCCCCCCCCCCC
CCCCCCTATATTTATAATATACAGACTACATAATACAACACCCCCCCCAA
CCTACCATCAATCAGATTACAACACCCNACCCCCCCCCACCCAACACAA

Query= MSMg01no422_k04.b1 MSMg01no422_k04.b1 CHROMAT_FILE:
MSMg01no422_k04.b1 PHD_FILE: MSMg01no422_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:07 2005
         (573 letters)



>mm_chr19_35264419_35265391
          Length = 973

 Score = 1048 bits (542), Expect = 0.0
 Identities = 563/570 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttttgtgttttgcaagtacagtgtgtcaaaggatgctctgacaaattgaactt 63
           |||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||
Sbjct: 773 ggaattcttttgtgttctgtaagtacagtgcgtcaaaggatgctctgacaaattgaactt 714

                                                                       
Query: 64  tgcagggagactaaagggaagcaaaggaagctgctaaccactgaaagtaatgcactttct 123
           ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 713 tgcagggaggctaaagggaagcaaagaaagctgctaaccactgaaagtaatgcactttct 654

                                                                       
Query: 124 taatgacttagcaggggctgggcccatcttagtagtcttctcctgccttcagctgcaaac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 taatgacttagcaggggctgggcccatcttagtagtcttctcctgccttcagctgcaaac 594

                                                                       
Query: 184 agacaatggagctcactctgggaaacacataattggtctttatcttctaggatgagccag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 agacaatggagctcactctgggaaacacataattggtctttatcttctaggatgagccag 534

                                                                       
Query: 244 tttaccatagacttgcttaatttttgtcaatataaaatcctgcaacctaaaatttcagag 303
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tttaccatagacttacttaatttttgtcaatataaaatcctgcaacctaaaatttcagag 474

                                                                       
Query: 304 catttttctttctcttcttttttaaaatgaactctactggaagtgtctcaggtttattcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 catttttctttctcttcttttttaaaatgaactctactggaagtgtctcaggtttattcc 414

                                                                       
Query: 364 atgtaaacttgatatatacatgtcctaaggaaggagcaatccctagcagtagcttcatcc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 atgtaaacttgatatatacatgtcctaaggaaggagcaatccctagcagtagcttcatcc 354

                                                                       
Query: 424 catgactcccctgcaaggaaacaccccatggcttccattcatttgataccatttagcaat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 catgactcccctgcaaggaaacaccccatggcttccattcatttgataccatttagcaat 294

                                                                       
Query: 484 tcaatccatacctcgttctctgcctatatgttgggtatacatacagtaaaggaacaatac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tcaatccatacctcgttctctgcctatatgttgggtatacatacagtaaaggaacaatac 234

                                         
Query: 544 aagataatgtggatatatcatttttctcct 573
           |||||||||||| |||||||||||||||||
Sbjct: 233 aagataatgtgggtatatcatttttctcct 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)