BAC Information

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BAC

Clone NameMSMg01-423E07
Chromosome19 (Build37)
Map Location 45,507,345 - 45,507,951
singlet/doubletsinglet
Overlap geneBtrc
Upstream geneWnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1
Downstream geneEG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423E07.T7 (MSMg01no423_e07.b1)MSMg01-423E07.TJ (MSMg01no423_e07.g1)
ACCAG517464AG517465
length747735
length of high quality
(start - end)
489 (57 - 545)607 (64 - 670)
definitionCHROMAT_FILE: MSMg01no423_e07.b1 PHD_FILE: MSMg01no423_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:54 2005CHROMAT_FILE: MSMg01no423_e07.g1 PHD_FILE: MSMg01no423_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGGGTA
TCCTGGAGAGGGTATAAATGCGAGTGCCCAGAGAGGAGCCTTCGAGGCTG
CTGCACCCCTTGCTGCTGCTCGTTCCTGTAGCTGTGGATCATCAACTAAT
CATGAGCAAAGACAGAAGAAGAAATCGGATGACCTGACAAAGATTGGACT
TGCCCCCCAAGGAACTCCATGTCCCTAATCATCAAGAAGTAGTCTAGCTG
GGCGTGGTGGAGCACGCCTTTAATCCCAGCACTCGGGAAGCAGAGGCAGG
TGGATTTTTTTTTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGAC
AGCCAGGACTATACAGAGAAACCCTGTCTCGAAAAAACAAACAAACAAAC
AAACAAAAGAAGTAGTCTAAAGAGATCCATGCCCTCTTTTCCCTCTAACC
TCTCTTGCCTACCTAGTGTTGGGGACTTGGGGGGTGGTAGATATAAGAAC
CCAATAAAGTAACCATAAGGTACGATTACACCCTTCCCTCCCACGTAAAA
AACAAACAAACTAACCAACCACCAACCCCTAACCGTGTCCAGGCAAAAAG
ATGTGAATTAAATAAGGTCGCGCCAATACGACATATCTCATTTTTTTTTT
TTTCTCTTTCCTCACCTCCCTTACCAAAAATCTCATTCTCGATCCCCTTT
TTTTATCCGAACACCCCCCCCCTCCGTCACGTTCTTACTGTCCCTCT
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAAAATTTTAAAAATCTAACCAATAAACAAACACACAC
ACAGTGGGTGAACTTGTATTTGCACAGCAACATCATGCCATGGTCGGCAG
TGGGGAAGAGTGTCACTGTGGTCAGCAGCAAGGAGCAGACAACGCCACTG
TCCACTCATACCTGTCCATAACCGCTTTCCTGACTTCCTGCTGCAGACAC
AGATGAGAGGCCTAACGTGACTCTTCCTCACGTTGGGGTTCTCCATAAGC
CCTGATATTTATGTACTGACTCGACTTTACCCTCACAGCTTGTTTCTGTT
TCAGTGTTAGGTTCATTTGGCTTTGCTGGCGCCACTTCTCTTTAACATTG
TCCCTTTTTATGTGGTTAAGGCCACTACTTCCAACCCTATGAATGAAAGC
GGACAAATAGGGGAGAAAGGAATGAACTGTGAACACCTCAAACAAGAAAG
GTTGCTTAAAAAACTAAGTGTCACATTCTGACAGTTCAATATTTCATGAC
CAATACAAGGAATGTGCAATGGCACTGCAACTTTAAATCTTCGCCTCTGT
GTCAGTCTCTCTCTCTCATTGTAATGCCAAAGGGAACAGCAATCAGAGTG
GAGATGTTCAACGTGATGGAAGTCAGGACACCATCGGATCTACGTGCCAG
AAACACGACCTTGTTTATTTTTTTCCCCATATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_e07.g1 MSMg01no423_e07.g1 CHROMAT_FILE:
MSMg01no423_e07.g1 PHD_FILE: MSMg01no423_e07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:54 2005
         (607 letters)



>mm_chr19_45507145_45508151
          Length = 1007

 Score = 1112 bits (575), Expect = 0.0
 Identities = 599/607 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaattttaaaaatctaaccaataaacaaacacacacacagtgggtgaacttgtatttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 aaaattttaaaaatctaaccaataaacaaacacacacacagtgggtgaacttgtatttgc 748

                                                                       
Query: 61  acagcaacatcatgccatggtcggcagtggggaagagtgtcactgtggtcagcagcaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 acagcaacatcatgccatggtcggcagtggggaagagtgtcactgtggtcagcagcaagg 688

                                                                       
Query: 121 agcagacaacgccactgtccactcatacctgtccataaccgctttcctgacttcctgctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 agcagacaacgccactgtccactcatacctgtccataaccgctttcctgacttcctgctg 628

                                                                       
Query: 181 cagacacagatgagaggcctaacgtgactcttcctcacgttggggttctccataagccct 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 627 cagacacagatgagaggcctaacgtgactcttcctcatgttggggttctccataagccct 568

                                                                       
Query: 241 gatatttatgtactgactcgactttaccctcacagcttgtttctgtttcagtgttaggtt 300
           || |   | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gagacccacgtactgactcgactttaccctcacagcttgtttctgtttcagtgttaggtt 508

                                                                       
Query: 301 catttggctttgctggcgccacttctctttaacattgtccctttttatgtggttaaggcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 507 catttggctttgctggcgccacttctctttaacattgtccctttttatgtgcttaaggcc 448

                                                                       
Query: 361 actacttccaaccctatgaatgaaagcggacaaataggggagaaaggaatgaactgtgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 actacttccaaccctatgaatgaaagcggacaaataggggagaaaggaatgaactgtgaa 388

                                                                       
Query: 421 cacctcaaacaagaaaggttgcttaaaaaactaagtgtcacattctgacagttcaatatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cacctcaaacaagaaaggttgcttaaaaaactaagtgtcacattctgacagttcaatatt 328

                                                                       
Query: 481 tcatgaccaatacaaggaatgtgcaatggcactgcaactttaaatcttcgcctctgtgtc 540
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 327 tcatgaccaatacaaggaatgtgcaacggcactgcaactttaaatcttcgcctctgtgtc 268

                                                                       
Query: 541 agtctctctctctcattgtaatgccaaagggaacagcaatcagagtggagatgttcaacg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agtctctctctctcattgtaatgccaaagggaacagcaatcagagtggagatgttcaacg 208

                  
Query: 601 tgatgga 607
           |||||||
Sbjct: 207 tgatgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)