BAC Information

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BAC

Clone NameMSMg01-423K11
Chromosome19 (Build37)
Map Location 59,516,927 - 59,517,167
singlet/doubletsinglet
Overlap geneEmx2os
Upstream geneGfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073
Downstream geneEmx2, Rab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423K11.T7 (MSMg01no423_k11.b1)MSMg01-423K11.TJ (MSMg01no423_k11.g1)
ACCAG517759AG517760
length730749
length of high quality
(start - end)
330 (57 - 386)241 (61 - 301)
definitionCHROMAT_FILE: MSMg01no423_k11.b1 PHD_FILE: MSMg01no423_k11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:23 2005CHROMAT_FILE: MSMg01no423_k11.g1 PHD_FILE: MSMg01no423_k11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTAAACGACTCACTTTCAAAAGAGGATCCGCGGAATTCTGTTT
TCCGACTGCTTCTAATACTTACTCCTCTTTCCCTGAGAGCTGCCTCTTTA
GTCAAAGTCCTCGAGAGGAGGGTAAATTGACTTAATTTTTTGCTCTTCAT
TTTTTATATTATCCTTTATATCTTTATATTATCCTTTGTATCTTTACATT
TTATATTATCCTTTGTGTCTTTATATTTTAGCTTCCTTTCTTTTTTTCTT
TTTATATTTCTTAAGTTACTTATTTTTCTGCGCGCGTCTTCTTTTTCCTT
TCTCTTCTTTTCTGATATGCCTTCCTGGTACTCCTACAAAGTCTCTGCCC
TTCCTTAACAGCTGGTCCCACACAAACCCAGCAACAATTACTATACCCAC
TGCGTAAGAAAGCATACCTCTCAGAGACTTACCTTAATTTCTTTATACTT
ACTGGTACCACCGCTCCTCAGCTGAAGAGTTCTGAATCCACGCAGTTGAA
TCCTTTTCATCAGTCTGTTTTGCACGAACCTTTTTTATTTCCACTCCCCA
CCTGAATACTTCTGAATCCCCCCCGTATTCTTCCCACCAATCTGTTTTAC
CTCAAACTTTCACAACCGCTCCTTCTCCGCGCTTTTTTTCTGATATCCTC
CAGCCAAAGGGTGACTTCCCTTTTGTCTTGAACTTGTTTTTTTGTATCCC
TTTCTTCTCGTCCTCTCTTATCCGCGCTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CCAACACGGAATTCCTCACATACCTCACTGTTGGTCCTCAGGTGGAAATA
GGAAGACATATCTCTCCCAAATAAAAACGCCATTCACTTATGTTCCAACG
TGTCCCATACTTGACTTTTCTGAAAATAACTTTAGTTATCTTTGGTATTT
CCCTCCGAGAGAAATGCAGTCACCCTTGCAATTGCTATTATTCCCATTTT
GTAGAAAGGGAAACTGAGTATTTGGAGAGGGATGATTTTTGCTTGGTCAC
ATGTTTTTTTGTAAAAATTATTTGGAACGGCTTCTACACCTGCCACAACT
GCATTTCTTCTGGATAAACACACCCTTCAGCCCACAGATGCAAGCTGCTT
TTATCTGAGATTGACCAAAAACCACTGTGGAGTCTCTTGACACACTCTGG
AGTGATTTCCACCTCCGAATCCTCACTCATCGTTGTTTGCGTGTCTCCTT
GACATTTGTAGATATGCCCGTCCAGCCCTATTTCTCTGGTGCGTTTACAA
TATGCCTTGGTTTTAAATGCTGTGACCCCTTTAATGTATTGCTTCCCCTC
CAAACATTTATTTCTCCCTTTACCGTCCCCCTATATTGTACCGTTTCCTT
TTGTCCTCTTCCACGTTTCCCCCTTTCCCCCTACCTTTCCCTCCTTTCCG
TAACCTATTTTTATTGCACTTTTTCTATTTTCTGTACCCTTTTCGTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_k11.g1 MSMg01no423_k11.g1 CHROMAT_FILE:
MSMg01no423_k11.g1 PHD_FILE: MSMg01no423_k11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:23 2005
         (241 letters)



>mm_chr19_59516727_59517367
          Length = 641

 Score =  466 bits (241), Expect = e-136
 Identities = 241/241 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcctcacatacctcactgttggtcctcaggtggaaataggaagacatatctctcccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcctcacatacctcactgttggtcctcaggtggaaataggaagacatatctctcccaa 260

                                                                       
Query: 61  ataaaaacgccattcacttatgttccaacgtgtcccatacttgacttttctgaaaataac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaaaacgccattcacttatgttccaacgtgtcccatacttgacttttctgaaaataac 320

                                                                       
Query: 121 tttagttatctttggtatttccctccgagagaaatgcagtcacccttgcaattgctatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttagttatctttggtatttccctccgagagaaatgcagtcacccttgcaattgctatta 380

                                                                       
Query: 181 ttcccattttgtagaaagggaaactgagtatttggagagggatgatttttgcttggtcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcccattttgtagaaagggaaactgagtatttggagagggatgatttttgcttggtcac 440

            
Query: 241 a 241
           |
Sbjct: 441 a 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)