Query= MSMg01no423_m17.b1 MSMg01no423_m17.b1 CHROMAT_FILE:
MSMg01no423_m17.b1 PHD_FILE: MSMg01no423_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:33 2005
(573 letters)
>mm_chr19_17259014_17259985
Length = 972
Score = 971 bits (502), Expect = 0.0
Identities = 553/570 (97%), Gaps = 3/570 (0%)
Strand = Plus / Minus
Query: 5 gaattcctctgtctgcacaattgatcctatccaatagcacaggtgtctcctcatctcagg 64
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 772 gaattcctctgtctg-acaattgatcctatccaatagcacaggcgtctcctcatctcagg 714
Query: 65 aattataaccctgatcaatttagaactagctctcaagtattttgctatcttgaagtctct 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 aattataaccctgctcaatttagaactagctctcaagtattttgctatcttgaagtctct 654
Query: 125 tagtttatcaattccacgatgaaatagttaaattttattgtattttgttatctttttctt 184
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 653 tagtttatcaattccacgatgaaatagttaaattttattgtattttgtcatttttttctt 594
Query: 185 ttaaagaatttgctttacataggagtattacatcatttgagctcatatggctgtagggta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 593 ttaaagaatttgctttacataggagtattacatcatttgagctcatatggctgtaggata 534
Query: 245 attttctaggaacagcatcttgcctgcgtcactgtgtgtag-agcatttagcgttcatgg 303
|||||||| ||||||||||||||||||||||||| |||||| | ||||| || |||||||
Sbjct: 533 attttctaagaacagcatcttgcctgcgtcactgggtgtagta-catttcgctttcatgg 475
Query: 304 atattttcatccttgatatgtcacactaaaatatgtaagggcctgtttccttctgttttc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 atattttcatccttgatatgtcacactaaaatatgtaagggcctgtttccttctgttttc 415
Query: 364 aaaacacagtagactgtcagactttttaatccttgacaatttaagatgtgtgttatttta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aaaacacagtagactgtcagactttttaatccttgacaatttaagatgtgtgttatttta 355
Query: 424 ataattaaagagggtgagaattttacaatgctcattgcttcttctacttctctcactcac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ataattaaagagggtgagaattttacaatgctcattgcttcttctacttctctcactcac 295
Query: 484 gtgaaggcgcctgctaatgctctccctgcggccctcactgatctgctggagatccccata 543
||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| |
Sbjct: 294 atgaaggcgcctgctaatactctccctgcggccctcactgatctggtagagatccccaca 235
Query: 544 cagaatcctgacaggcactgcaataactgt 573
||||||||||||||||||||||||||||||
Sbjct: 234 cagaatcctgacaggcactgcaataactgt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 972
Length adjustment: 10
Effective length of query: 563
Effective length of database: 962
Effective search space: 541606
Effective search space used: 541606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no423_m17.g1 MSMg01no423_m17.g1 CHROMAT_FILE:
MSMg01no423_m17.g1 PHD_FILE: MSMg01no423_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:33 2005
(523 letters)
>mm_chr19_17087616_17088543
Length = 928
Score = 808 bits (418), Expect = 0.0
Identities = 495/528 (93%), Gaps = 15/528 (2%)
Strand = Plus / Plus
Query: 1 agctagctgctgctaagcctgataccagggaggcaggcagatatgtaaacacactgcctc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 agctagctgctgctaagcctgataccagggaggcaggcagatatgtaaacacgctgcctc 260
Query: 61 acctttatagaatttgaagaaaaatgcattttaactttttaaatactttcttagaaacat 120
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 acctttatagaacttgaagaaaaatgcattttaactttttaaatactttcttggaaacat 320
Query: 121 -----tacatatttatcatcactgtttgttctgatgcttatccatcatccatcatttgta 175
||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 attattacatatttatcatcactgtttgttctgatgcttatccatcat-------ttgta 373
Query: 176 acgattgctcttacagtcatttaaaaatgaacgccacgtagactacttattgttattgag 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 acgattgctcttacagtcatttaaaaatgaacgccacgtagactacttattgttattgag 433
Query: 236 gcatatgcttttattttatcaatataatcagctttattatttgacaacagctttatgcac 295
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gcacatgctcaaattttatcaatataatcagctttattatttgacaacagctttatgcac 493
Query: 296 tttaccaaaattaaaagtaagggttaataaagaaatactcaagtcaaagaagagttgatt 355
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tttaccaaaattaaaagaaagagttaataaagaaatactcaagtcaaagaagagttgatt 553
Query: 356 cctactttgaccaagtcaagtacataatggtgttttatacttcaataccattaaactttt 415
| |||||||| |||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 554 cttactttgatcaagtcaagtacataatggtattttgtacttcaataccattaaactt-- 611
Query: 416 aaaatttggcttttttttgcgattgtttatatgaatacagttttttattgctgctcttat 475
||||||||||||||||| | ||||| ||||||||||||||||||||||||||| |||||
Sbjct: 612 aaaatttggcttttttt-gtgattgcttatatgaatacagttttttattgctgttcttag 670
Query: 476 atgcggcaaattgcttcatttacttactattctcaagccatttctaga 523
||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 atgtggcaaattgcttcatttacttactattctcaagccatttctaga 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 928
Length adjustment: 10
Effective length of query: 513
Effective length of database: 918
Effective search space: 470934
Effective search space used: 470934
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
