Query= MSMg01no424_m10.b1 MSMg01no424_m10.b1 CHROMAT_FILE:
MSMg01no424_m10.b1 PHD_FILE: MSMg01no424_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:49 2005
(524 letters)
>mm_chr19_57062935_57063858
Length = 924
Score = 818 bits (423), Expect = 0.0
Identities = 453/463 (97%), Gaps = 2/463 (0%)
Strand = Plus / Plus
Query: 5 gaattctttaatgcacacatggctttctgaaacattgtttatactgttttaagacatttg 64
||||||||||| | || || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttaaaggacccacggctttctgaaacattgtttatactgttttaagacatttg 264
Query: 65 aaggaactccagctgaggacaaagggaaaaaaataacagaaagaaaaggagaatgaaaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaggaactccagctgaggacaaagggaaaaaaataacagaaagaaaaggagaatgaaaac 324
Query: 125 tggaattttcctggctgggcccaaccctcttttccctggctggcaggagaggggctccct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggaattttcctggctgggcccaaccctcttttccctggctggcaggagaggggctccct 384
Query: 185 tcctagagggaatggaagcagaacctgaggaatg-agggctgtgactctaggctgaggga 243
|||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||| |
Sbjct: 385 tcctagagggaatgaaagcagaacctgaggaatgcagg-ctgtgactctaggctgaggaa 443
Query: 244 cccacttccctctgtggacaggtacaaggctagaggagtccccaactctgtcttcttcag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cccacttccctctgtggacaggtacaaggctagaggagtccccaactctgtcttcttcag 503
Query: 304 tcccctccccctcctgccaggttgtaggaagaaggcagaggacaggagggagccagggcc 363
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcccctccccctcctgccaagttgtaggaagaaggcagaggacaggagggagccagggcc 563
Query: 364 caggcctgtgaggtcagttccaatgtgcccactcaccctgtcacaatggaggctgcaggc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caggcctgtgaggtcagttccaatgtgcccactcaccctgtcacaatggaggctgcaggc 623
Query: 424 agcatgggctgccctggaagcacaaaccctccaagacccaggg 466
|||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 624 agcatgggctgccccggaagcacaaaccctccaagacccaggg 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_m10.g1 MSMg01no424_m10.g1 CHROMAT_FILE:
MSMg01no424_m10.g1 PHD_FILE: MSMg01no424_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:49 2005
(188 letters)
>mm_chr19_57268610_57269197
Length = 588
Score = 335 bits (173), Expect = 1e-96
Identities = 182/185 (98%)
Strand = Plus / Minus
Query: 4 cacaaaagtgacctagccaggtaaatggagttttagactccggcttcttctgtgttttgt 63
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 388 cacaaaagtgacctagccaggtaaatggagttttagactccggcttcttctatgttttgt 329
Query: 64 tttgtttcctgcaacaacagaggtctcaatgctcatactcctacaagggagggatgtctg 123
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 328 tttgtttcctgcaacaacagaggtctcaatgctcatactcctacaagggaaggatgtctg 269
Query: 124 ttgtttgttctctacctgacatttgaaaattaggagagtgtgcacgagtcacacacacac 183
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 268 ttgtttgttctctacctgacatttgaaaattaggagagtgtgcacgagtctcacacacac 209
Query: 184 acaca 188
|||||
Sbjct: 208 acaca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space: 104400
Effective search space used: 104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
