BAC Information

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BAC

Clone NameMSMg01-426A01
Chromosome19 (Build37)
Map Location 4,984,643 - 5,172,322
singlet/doubletdoublet
Overlap geneNpas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1
Upstream geneAcy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11
Downstream geneSf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426A01.T7 (MSMg01no426_a01.b1)MSMg01-426A01.TJ (MSMg01no426_a01.g1)
ACCAG519550AG519551
length762767
length of high quality
(start - end)		166 (44 - 209)523 (75 - 597)
definitionCHROMAT_FILE: MSMg01no426_a01.b1 PHD_FILE: MSMg01no426_a01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:22 2005CHROMAT_FILE: MSMg01no426_a01.g1 PHD_FILE: MSMg01no426_a01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,984,643 - 4,984,801)(5,171,800 - 5,172,322)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCG
GAATTCTACGTGGTTGTCAAGAGCCCCTCGGGGCACAGGCTAGCCCCAGG
TGGGCCATGCCTTTCCCCCACCAGAGCCCAGGGGTGGCTTTGCCCCTAGG
AGTGGAGAACTGGCCCAGGCCCATGGGGCAGCGCGGTGAGGAAGTGAGAC
TCCCCCATTCGCCGCTTGAAATCCATTCAAGGAAACTCACTACGAGTGAA
TACAGATTGAAATGGAGACTGGGATCGCTCGAAGTCTCTTGATTTTAAAA
AGTTGCTCCCCTCCCTTACCCTCCCACCTCCCCCCTAAATCCTTCAGGGC
CTGGAGAATCAGATGTATCCCCCTCTGGCCCCCAGAGTCCCCCCAGACAG
TCCCGGGGGGGTGGAGAGCGGCTCCACGTCTTGATGACAATATGCCATAC
TTGACGACGTTAAGTCACAGACTTATTCTAAACGTTGGTTCCCCTCCAGT
TCCATCTGTGGTGAAAGAGAGAGAGAGAGAAGAGAGAAAGTGCGTATGTT
AGTCAAGCTTATTCAGTAAAAGCGTCATTGCGCTTCAGGCGATGGTACAA
TATTGCTATAGTCAATGTACGCCCAATGGGGTTACCCAATGGAATGGACC
CCCCAGGGGGTTAGCTAGAAAATAAGGCCCTTTTTCATAATGGAGGGTAA
ATCTGTGGCCCCTGGTTTTTGGCACACACCAGCTTATTGGCCGCTCGATT
TGGGCCCCTGGG

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCTCTTTCTCTCTCTACCAGAACTT
CCACCTCCTATTTCTGGGCCCAATTCATTGTCCACAGGCTTTTTGTCAGG
TGGAACTTTCACACAGTGCACAAAGGATTCTCTCTACAGGAATAATTTAA
TTTTTAAAATTCTGCTTCATCTGGAGAATGTCCCTTTAAAAACGTCCGGG
TTTCCAAACTTTATTAATCTGTAAGGCCTAGTATCTGCGGATCCTTGAGG
AGTAGAGTGGGTAGAGTTCAGTTTTCACCTTTGGATCCTACAAGGTGGCA
GGAGAGAACCGACTCCTCGAAGTTATTTTTTGACCCCCACACACTCTCTC
TAACTAGTTTTAAAAAGGAGATTGAGGAGAGAGTTCAATTGGTAAAGTGA
TTGCAAGAGGACCTGAATTCCATCCCCAGAACCCACATTCTAAAAAGCCA
GGTGGAGCCTGGCATGTGGTTCACACCTTTAATTCCAGCACTAGTCAGAG
GCAAATGGCTCTCTGTGTTTGAAGCCAGCCTGATCTAAAGAGCAAGGTCT
AAGAGAGTCAGGGCTACACAGAAAACTGTTTTGTNGGGGCTTGGGGGAAA
GAGCCCAGGTGGGTGTCACATTCCTATAATCCCAACACTGGGGGCGTTAA
AGACTGGGGATTCTCTGGAATTTTATACTGACCAGCCTATCCTTAATGGG
AAGTTTCAGGTTAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_a01.b1 MSMg01no426_a01.b1 CHROMAT_FILE:
MSMg01no426_a01.b1 PHD_FILE: MSMg01no426_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:22 2005
         (166 letters)



>mm_chr19_4984436_4985001
          Length = 566

 Score =  292 bits (151), Expect = 7e-84
 Identities = 157/159 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattctacgtggttgtcaagagcccctcggggcacaggctagccccaggtgggccatgc 67
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctacgtgggtgtcaagagcccctcggggcacaggctagccccaggtgggccatgc 267

                                                                       
Query: 68  ctttcccccaccagagcccaggggtggctttgcccctaggagtggagaactggcccaggc 127
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctttcccccaccaaagcccaggggtggctttgcccctaggagtggagaactggcccaggc 327

                                                  
Query: 128 ccatggggcagcgcggtgaggaagtgagactcccccatt 166
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ccatggggcagcgcggtgaggaagtgagactcccccatt 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no426_a01.g1 MSMg01no426_a01.g1 CHROMAT_FILE:
MSMg01no426_a01.g1 PHD_FILE: MSMg01no426_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:22 2005
         (523 letters)



>mm_chr19_5171643_5172565
          Length = 923

 Score = 1004 bits (519), Expect = 0.0
 Identities = 522/523 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctctttctctctctaccagaacttccacctcctatttctgggcccaattcattgtcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctctctttctctctctaccagaacttccacctcctatttctgggcccaattcattgtcca 621

                                                                       
Query: 61  caggctttttgtcaggtggaactttcacacagtgcacaaaggattctctctacaggaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caggctttttgtcaggtggaactttcacacagtgcacaaaggattctctctacaggaata 561

                                                                       
Query: 121 atttaatttttaaaattctgcttcatctggagaatgtccctttaaaaacgtccgggtttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atttaatttttaaaattctgcttcatctggagaatgtccctttaaaaacgtccgggtttc 501

                                                                       
Query: 181 caaactttattaatctgtaaggcctagtatctgcggatccttgaggagtagagtgggtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 caaactttattaatctgtaaggcctagtatctgcggatccttgaggagtagagtgggtag 441

                                                                       
Query: 241 agttcagttttcacctttggatcctacaaggtggcaggagagaaccgactcctcgaagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agttcagttttcacctttggatcctacaaggtggcaggagagaaccgactcctcgaagtt 381

                                                                       
Query: 301 attttttgacccccacacactctctctaactagttttaaaaaggagattgaggagagagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 attttttgacccccacacactctctctaactagttttaaaaaggagattgaggagagagt 321

                                                                       
Query: 361 tcaattggtaaagtgattgcaagaggacctgaattccatccccagaacccacattctaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcaattggtaaagtgattgcaagaggacctgaattccatccccagaacccacattctaaa 261

                                                                       
Query: 421 aagccaggtggagcctggcatgtggttcacacctttaattccagcactagtcagaggcaa 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 260 aagccaggtggagcctggcatgtggttcacacctttaattccagcactagtcaggggcaa 201

                                                      
Query: 481 atggctctctgtgtttgaagccagcctgatctaaagagcaagg 523
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 atggctctctgtgtttgaagccagcctgatctaaagagcaagg 158


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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