BAC Information

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BAC

Clone NameMSMg01-426E13
Chromosome19 (Build37)
Map Location 49,313,203 - 49,313,728
singlet/doubletsinglet
Overlap genenone
Upstream geneSorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1, EG433251, Sorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426E13.T7 (MSMg01no426_e13.b1)MSMg01-426E13.TJ (MSMg01no426_e13.g1)
ACCAG519762AG519763
length795785
length of high quality
(start - end)
254 (65 - 318)526 (69 - 594)
definitionCHROMAT_FILE: MSMg01no426_e13.b1 PHD_FILE: MSMg01no426_e13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:46 2005CHROMAT_FILE: MSMg01no426_e13.g1 PHD_FILE: MSMg01no426_e13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAATTCC
ATCAGAATTCCAAATCTAGATCTAATATCAATATTCTTCAAGCTATTCAA
CAAAAGAAAAACAGAAGGAACGCTACTCAATTATTTCTATGAAGCCACAG
TTACACTGATAACGTAAATCACAAAAAAGACCCAACAAAGAAAGAGAAAT
ACAGAACAGTTTCCCTTATGAATATTGATGCAAACAAAACTCAATAAAAT
TCTCATGAACCAAATCCAAGAACACATCTAAATGATCATGTACCATGATC
AAGTAGGCTTCATCCCATATTTGTTGGGATGGTTCAATATACAGAAATCC
ATCAAGGTATTCCACTATATAAACAAACTCAAAGGGGAAAAAAAAACATA
TGATAACCTCATTAGGTGTGGACAAAGCCTTTTACAAAATACAGCACCCA
TTCATGTTAAAAGTATTGGAGAGATCAAGAATTTAATGTACATAACTTAA
TATTATAAAAGCAATATACTGCAAACCATTAGCAAAAGCAAACTAAATGT
CGAAAACTTTAAGAAATCCCTTTAAAACCGGAGGAAACAAAGGGGCCCTC
CCCCCCCACCTATTCATAAAGACCCCAAGTTTTTGCTTGAGCATTTTAAC
CCCTTTGTAGTGGAAGGGGTTCCATTTGGGAGGGGGAGAGGAAGTTCCCC
CTTTTTGCGGGGAAGGAGGGTAATATAAGGGCCCCCCAATTCCTCCAAAA
ACTCCCCTCGGGGATAAAAATTTTTTTCATGGGGGGGAAAAAAAA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTTCATTTTGAAGTTTGCCTGTAAGACTTTA
TGTTTCAACTTCACATCACAGAAACTCCTGTTTCATGAGTTGACCCTTCT
AGAGAAAGTCTTTGACTATTGCTCATGTTTTAGAAGACTTCCATCCTTCC
TTTAACTCCTTTAAGAACAAAACAGCCATTAAAAATGGTAGTAAATGATG
AGAAGAACATTATTTCTTTGTTTCACGCTTGTCGTGTTGGTGAGGGTCAA
CTGTGGGAAGAATAGAACCTTATAGTCACACATTTTGAGTATTTTCATTA
ATATAGATGCCACATTATTTAGGACAATTTGAACCACATCCAACAGGCCA
ATATAACAGCAAGATAGAGAACATGCGTCTTTAAAACCTTAATGCAATCA
TAGATCATATTCTGCAATCAACTATTTCCTTGCTAGCATTATAAGAACTC
TGGTCAATGAAAAATATTCCTAATAGTAAGTCTCTTTAAAGTTAATTTTT
AATCTTAAGATGATATTTATCATGCATAGCACAGGGATAAACACCTTTTA
TTTCAGCACTTGGGAGGCACAGTCAATTCTCTGTTTTACAGGGCAGTGGA
ACCTGTAACATGAGTGTCTGAAAAGGCAAAAAAACCAGTAAGACTACTTC
TCCCAACCAAGATTCCATTAAGAATCTTTTTTCTTTCTATGGGAAACATC
TTTTTCACCTGTTGGTGTGGCACATGGTGGCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_e13.g1 MSMg01no426_e13.g1 CHROMAT_FILE:
MSMg01no426_e13.g1 PHD_FILE: MSMg01no426_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:46 2005
         (526 letters)



>mm_chr19_49313003_49313928
          Length = 926

 Score =  978 bits (506), Expect = 0.0
 Identities = 521/526 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttcattttgaagtttgcctgtaagactttatgtttcaacttcacatcacagaaactcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ctttcattttgaagtttgcctgtaagactttatgtttcaacttcacatcacagaaactcc 667

                                                                       
Query: 61  tgtttcatgagttgacccttctagagaaagtctttgactattgctcatgttttagaagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tgtttcatgagttgacccttctagagaaagtctttgactattgctcatgttttagaagac 607

                                                                       
Query: 121 ttccatccttcctttaactcctttaagaacaaaacagccattaaaaatggtagtaaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttccatccttcctttaactcctttaagaacaaaacagccattaaaaatggtagtaaatga 547

                                                                       
Query: 181 tgagaagaacattatttctttgtttcacgcttgtcgtgttggtgagggtcaactgtggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tgagaagaacattatttctttgtttcacgcttgtcgtgttggtgagggtcaactgtggga 487

                                                                       
Query: 241 agaatagaaccttatagtcacacattttgagtattttcattaatatagatgccacattat 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agaatagaaccttagagtcacacattttgagtattttcattaatatagatgccacattat 427

                                                                       
Query: 301 ttaggacaatttgaaccacatccaacaggccaatataacagcaagatagagaacatgcgt 360
           ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 426 ttaggacaatttgaaccgcatccaacaggccaatataacagtaagatagagaacatgcgt 367

                                                                       
Query: 361 ctttaaaaccttaatgcaatcatagatcatattctgcaatcaactatttccttgctagca 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cttaaaaaccttaatgcaatcatagatcatattctgcaatcaactatttccttgctagca 307

                                                                       
Query: 421 ttataagaactctggtcaatgaaaaatattcctaatagtaagtctctttaaagttaattt 480
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 306 ttataagaactctggtcaatgaaaaatattcctaatattaagtctctttaaagttaattt 247

                                                         
Query: 481 ttaatcttaagatgatatttatcatgcatagcacagggataaacac 526
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttaatcttaagatgatatttatcatgcatagcacagggataaacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)