Query= MSMg01no427_m08.b1 MSMg01no427_m08.b1 CHROMAT_FILE:
MSMg01no427_m08.b1 PHD_FILE: MSMg01no427_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:44 2005
(187 letters)
>mm_chr19_37543700_37544286
Length = 587
Score = 331 bits (171), Expect = 2e-95
Identities = 185/193 (95%), Gaps = 6/193 (3%)
Strand = Plus / Minus
Query: 1 atgaaggggcttgccaccaagcccgaagattccacacagtggaagaagagaactgactcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 atgaaggggcttgccaccaagcccgaagattccacacagtggaagaagagaactgactcc 417
Query: 61 aaaacttgacctctgacctt------taccctgtggtgtgctcattccccctattctata 114
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 416 aaaacttgacctctgacctttacacgtaccctgtggtgtgctcattccccctattctata 357
Query: 115 cataaaatatgtaatggaaattttttaaaagaaaaataatatgaaaaaagacatatttct 174
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 356 cataaaataagtaatggaaaatttttaaaagaaaaataatatgaaaaaagacatatttct 297
Query: 175 caaatcctgtagc 187
|||||||||||||
Sbjct: 296 caaatcctgtagc 284
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space: 103641
Effective search space used: 103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no427_m08.g1 MSMg01no427_m08.g1 CHROMAT_FILE:
MSMg01no427_m08.g1 PHD_FILE: MSMg01no427_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:44 2005
(196 letters)
>mm_chr19_37415641_37416236
Length = 596
Score = 313 bits (162), Expect = 4e-90
Identities = 183/190 (96%), Gaps = 2/190 (1%)
Strand = Plus / Plus
Query: 6 cctgagttatttttgaggcagtgattgtgagagttgagctttctaactctattgaccatt 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 cctgagttatttttgaggcagtgattgtgagagttgagctttctaactctattgaccatt 265
Query: 66 aatgaaataggaactaagtatgaatagtcactggtacattgatgacactgacccacctaa 125
|||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 266 aatgcaataggaactaggtatgaatagtcactggtacattgatgacaatgacccacctaa 325
Query: 126 aaa-atatatatttgccgggcgtggtgtcgcatgcctttcatcccagcactcaggaggca 184
||| | | |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 326 aaagaaa-atatttgccgggcgtggtgtcgcatgcctttcatcccagcactcgggaggca 384
Query: 185 gaggcaggcg 194
||||||||||
Sbjct: 385 gaggcaggcg 394
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 596
Length adjustment: 8
Effective length of query: 188
Effective length of database: 588
Effective search space: 110544
Effective search space used: 110544
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
