BAC Information

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BAC

Clone NameMSMg01-427N23
Chromosome19 (Build37)
Map Location 22,905,448 - 22,905,823
singlet/doubletsinglet
Overlap geneTrpm3
Upstream geneTmem2, EG433229, EG433230
Downstream geneKlf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427N23.T7 (MSMg01no427_n23.b1)MSMg01-427N23.TJ (MSMg01no427_n23.g1)
ACCAG520969AG520970
length756760
length of high quality
(start - end)		483 (55 - 537)490 (83 - 572)
definitionCHROMAT_FILE: MSMg01no427_n23.b1 PHD_FILE: MSMg01no427_n23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:52 2005CHROMAT_FILE: MSMg01no427_n23.g1 PHD_FILE: MSMg01no427_n23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCGGGTTCCCTGCCAGAGCAGTATGCATGTTTAACCAC
TGAGTCATCTTCCAGCCCCAGTAACAGGATTTTATCTGCTAGTTCCATTG
GGCAACAAGAGTACTGACATAAGCCTGAACTGTTTTCAGGACTCTGGGAG
GATTTGCCATCTCCTGAAGACAATCATATCTAGGATGTGGTTTTTAATTG
CAAACAATTGCTTCTAGGAGCTATCTTATTTAGTGGTGCGGGGTAACTCG
CTTCAATCTCTTTGGATTGTAGGATAGAAGGTTTTCATGTGTCATTTTCA
TAAACCCTTTGTTTTGGTTAATCTTGTCCTATATTATTTGTGTAGTATTG
ATTTTAGTTCTGCTCTGAAGGTCTGATAGAACTCTGCAATGAATCTCTCG
AGTCCTGGGATATTTTGTATTTGGGATACTTTTATTATTGCTTTGATACC
ATTGCTAATTGTAGATCTATTTATTCACATAATCTTGGNTTAAATTTGGG
AAGTCATACACATTTAGAAACTCATCCATCTCTTTTAGATTTTTTTTCCA
ATTAAGTGGANTATGGATTTTGAAGGCTGTCTTGATGACTTTAGAAATTC
GCTGCCATCCGAAAAAGGCCCCTATGGTGCCAATTTATAACCTGGGGGTT
TCTTTCTTTCCTTGATCCCCCGACAAAAGGCCGGTTTTTTTGTCAAACGA
GCCGTT

NNNNNAACAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAAATCTTATGTATGAA
AGTTCATCTGACTGGGGCTATGGGTGGAGGAAAGACCATTTGTAACGTAA
GACTGGAAAGGAAGGTTGCGGACAAGCAGTAGATAATCTTCGCTGTCACA
GCATTTGGGCACACTATGCACAATGTTCTCTGTCCGTCTGTCTGTCTGTC
TGTCTGTCTGTCTGTCTCATACAAACCACACAGACACAGACACACAGACA
CACACACAGACACACACACAGACACACACACAGACACACACAGACACACA
TACAGACACACACACACACACACACACACACACACACACACACACCCCTC
TATTAATCCACACATCAATTTTTAGGCTTGGAGAGTAAGTAAGATAATTG
CCCAAGATAATTTACGTGATGAAAGACAGACAGAGTCAAGATCTGGTTTC
CAATGCACCTAACTCAGACTAAGATTATTTGCTAAAGCCAAACAGAGTCA
GAGGAAATGGAAGTCTTGAGTGGGGACTGTAGGCAGGACCTGGATTTANA
ATGCTGTAACAAATGGCTATCGTAGAGCAATGCGTACTTACTAAGAAGGA
GAAACTCTGGGCAGTTCTCTTGGACCACAGGGGGGCTTATAAGGATCCCG
CGGGCCATGGTGGGTAAAGAAAAAAAACCCCGTGGTAACCTTAAACACAG
CATTTCTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_n23.g1 MSMg01no427_n23.g1 CHROMAT_FILE:
MSMg01no427_n23.g1 PHD_FILE: MSMg01no427_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:52 2005
         (490 letters)



>mm_chr19_22904934_22905823
          Length = 890

 Score =  634 bits (328), Expect = 0.0
 Identities = 362/388 (93%), Gaps = 26/388 (6%)
 Strand = Plus / Minus

                                                                       
Query: 117 cagcatttgggcacactatgcacaatgttctctgtccgtctgtctgtctgtctgtctgtc 176
           |||||||||||||||||||||||||||||||||||||            |||||||||||
Sbjct: 890 cagcatttgggcacactatgcacaatgttctctgtcc------------gtctgtctgtc 843

                                                                       
Query: 177 tgtctgtctcatacaaaccacacagacacagacacacagacacacacacagacacacaca 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 tgtctgtctcatacaaaccacacagacacagacacacagacacacacacagacacacaca 783

                                                                       
Query: 237 cagac--------acacacacagacacacacagacacacatacagacacacacacacaca 288
           |||||        |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 cagacacacacagacacacacagacacacacagacacacatacagacacacacacacaca 723

                                                                       
Query: 289 cacacacacacacacacacacacac-----c-cctctattaatccacacatcaattttta 342
           |||||||||||||||||||||||||     | ||||||||||||||||||||||||||||
Sbjct: 722 cacacacacacacacacacacacacacacacacctctattaatccacacatcaattttta 663

                                                                       
Query: 343 ggcttggagagtaagtaagataattgcccaagataatttacgtgatgaaagacagacaga 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ggcttggagagtaagtaagataattgcccaagataatttacgtgatgaaagacagacaga 603

                                                                       
Query: 403 gtcaagatctggtttccaatgcacctaactcagactaagattatttgctaaagccaaaca 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gtcaagatctggtttccaatgcacctaactcagactaagattatttgctaaagccaaaca 543

                                       
Query: 463 gagtcagaggaaatggaagtcttgagtg 490
           ||||||||||||||||||||||||||||
Sbjct: 542 gagtcagaggaaatggaagtcttgagtg 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 88
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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