BAC Information

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BAC

Clone NameMSMg01-429M24
Chromosome19 (Build37)
Map Location 19,368,173 - 19,368,546
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
Downstream geneLOC100042218, LOC100041541
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429M24.T7 (MSMg01no429_m24.b1)MSMg01-429M24.TJ (MSMg01no429_m24.g1)
ACCAG522453AG522454
length780744
length of high quality
(start - end)
344 (37 - 380)403 (73 - 475)
definitionCHROMAT_FILE: MSMg01no429_m24.b1 PHD_FILE: MSMg01no429_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:24 2005CHROMAT_FILE: MSMg01no429_m24.g1 PHD_FILE: MSMg01no429_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAA
AATAATATGATCATTGATCCTGCGTTTATGCTATAATGAAAGATAAGATG
TGATCACAGGCACAAGTCCCTTCTAGTCCACTCCAGCATCAGGGTTCCTT
GCCCATAGAGTCTCCAGACATCCGCAAGGACCCACACAGGATCTCCCACA
GGATCTTAAGACCTCTGGTGAGTGGAACACAACTTCTGCCAGGAGGCAGG
TTCAAACACCAGATATCTGGGCACCTTCCCTGCGCTGCAAGAGGAGACCT
TGCCTGCAGAGAGTACTCTGACCACTGAAACTAAGGAGCAAGCTAGTCTC
CCAGGTCTGCTGATAGAGGCTAACATAATCACCTGAGTAACAAGCTCTAA
CCAGAGACCACTATAACAACTAGCTCCAGAGATTACCAGATGGGAAAAGG
GAAAACGTAGGATTTCTACTAACGGAAATCAAGACCCCCTCCCCATCTTT
AAAAAGGGGGCACCTCCTACCCCCCCCTAGGCCCTGGGGACCCCCAACCA
CAACCGAAAAAGTAAAATCCGGGATTTAAAAAGATTTCCCCCTGGGGAGG
GGGAAGGGACACTCCAAGGGCCTTTTTTACACTCCCTTTAGAAAACCTCG
GAAAACCCCGTTTCCCGGGGGAAAAATTTTTTAAAAAAAACCCACAATTC
CCTTAAAAATGCGGGAAACACTGTCCCCCTAGCGGGGGGCGTTTTATAAA
ACCTCCCCACATCTCAAGGGGGGGAGACAC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTTCCAGAATATTGTGCCTGGGAGGCT
ATCCATGCTCCAGAAGATGGTCCTACATCCATACATATACTGTAAGCACA
AGCAATTCAGTAGGTTTAAAAGAATTATGAAGAGAATTGTGAAACTGGGA
AGAAATAATGGTGAGTGGTATAGGGGAGGACCTTGTGGGAGGTAATACAG
GGTAGACGAAATCAAAATGTTATACATTGTGGACATAATTCTCCAAAATT
ATTTTTGAAAAGAAAATTAATTTCTTCCCTTTGGTTTTAAGTACCCAGAA
ATTTATTCATTCATAAATTTTTATATCATTTAAGGACATTTATGTGGGTA
TAAAACATGGATTTAACCATAATAAGAATTCATACTGCACCTTCTCATGG
GTCCCATTGACTTCTCAATATAAAACGGAGATATGGTCGGGCAGTGGTAG
CGCACACCTTTAATCCAGCACTTGGGAGGCAAAGATACGCAGATTTCCGG
AGTTGAGGCCTCCTGGGCCACCGAGTGAATTCCCGGACAGCCAGGGGTTC
CGAAAAAAAATTTGTGTTGAACACCCACCCCACTTTTTCCACTTTTACCT
TATCCCAACACCTCTGGAAAATTATGGGGAAAATTTTGTCCCTTCCCCCC
CCCTTGTCGGCTTTAAAAAACTCTCCTTTCTCCCCCCCCCATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_m24.g1 MSMg01no429_m24.g1 CHROMAT_FILE:
MSMg01no429_m24.g1 PHD_FILE: MSMg01no429_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:24 2005
         (403 letters)



>mm_chr19_19367744_19368546
          Length = 803

 Score =  692 bits (358), Expect = 0.0
 Identities = 370/374 (98%)
 Strand = Plus / Minus

                                                                       
Query: 30  tccatgctccagaagatggtcctacatccatacatatactgtaagcacaagcaattcagt 89
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tccatgctccagaagatggtcctacatccatacatatactgtaagcacaagcaattcagt 744

                                                                       
Query: 90  aggtttaaaagaattatgaagagaattgtgaaactgggaagaaataatggtgagtggtat 149
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aggtttaaaagaattatgaagagaattgtgaaactgggaagaaataatggtgagtggtat 684

                                                                       
Query: 150 aggggaggaccttgtgggaggtaatacagggtagacgaaatcaaaatgttatacattgtg 209
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aggggaggaccttgtgggaggtaatacagggtagacgaaatcaaaatgttatacattgtg 624

                                                                       
Query: 210 gacataattctccaaaattatttttgaaaagaaaattaatttcttccctttggttttaag 269
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gacataattctccaaaagtatttttgaaaagaaaattaatttcttccctttggttttaag 564

                                                                       
Query: 270 tacccagaaatttattcattcataaatttttatatcatttaaggacatttatgtgggtat 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tacccagaaatttattcattcataaatttttatatcatttaaggacatttatgtgggtat 504

                                                                       
Query: 330 aaaacatggatttaaccataataagaattcatactgcaccttctcatgggtcccattgac 389
           |||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 503 aaaacatggattgaaccataataagaattcatactataccttctcatgggtcccattgac 444

                         
Query: 390 ttctcaatataaaa 403
           ||||||||||||||
Sbjct: 443 ttctcaatataaaa 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)