BAC Information

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BAC

Clone NameMSMg01-430L01
Chromosome19 (Build37)
Map Location 27,139,349 - 27,139,635
singlet/doubletsinglet
Overlap genenone
Upstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2, Gm815
Downstream geneLOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997, LOC433235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430L01.T7 (MSMg01no430_l01.b1)MSMg01-430L01.TJ (MSMg01no430_l01.g1)
ACCAG523124AG523125
length789783
length of high quality
(start - end)
287 (64 - 350)381 (81 - 461)
definitionCHROMAT_FILE: MSMg01no430_l01.b1 PHD_FILE: MSMg01no430_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:40 2005CHROMAT_FILE: MSMg01no430_l01.g1 PHD_FILE: MSMg01no430_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTTTTTTAATTTGTGTTCGCTTATACGAATCACTATTTCCAGAGGATC
CGCGGAATTCCACTCTTGCAGAGCTCGCAGGTCTGCATACATCAGTCATA
TCTGCTCACCTTGTTGCTTCACCTCTATAGTTTAAAATGTGTAGGACTGT
GATTTGTTACCCAAAGAACCACTTTTGAATCAGTAGGTGTTTTTCCTCCA
AGTTGGTTAAGGGCTAGAAATAGCAGACTGCAAGACATTTTCAAAACAAA
ATATTTCTTCCCTTTAGATAAGCGTATGAATGTGGAGAAAGAGCCTGGGA
ATTCTTGTGTTGGCAAAAGTGTGAGCGACTGTGGCTGCTGCTTTCTGTGG
GCCCCCACCCTGGAGCCAGTCCAGCCTTCGCTGCAGGGCTTTCTCTTTCA
GGGTCCTAATAAAGGACCAGCATGGATGGTGATTCTTATCTACTTTTTCA
CTTCTTGTTTCCTGCTTTTTTCTTCACTATTGTTCACTTTACTCATTACA
TATTCTTACTTCTTTCTTTCACTACTCTATCCTTGTTTACTCAATCAACT
TACTCTCTCCGTTTTTTTTCCCTTTACCTTTTTTCCCCCCAATTCCCTAT
CATTTTTTTCCCTTTCTTCTTTTCCCTTTTTCTCCCTTATCTCCATCTTT
CCTTATCCTCTCTTATTCCATCCTTTCTTTTTCCCCACATTTATTTAATT
ACTTGCTATTTCCCCTTTCCCTTTTCTATCCTTTCTTATTTTTTCTACTT
CCCCCACTTTTTTCCTCCTCCCCTTCTTTTTTCCTTTCG
CCCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATAAAACCAGAGATACT
GAAATTTATAGAGGAGAAAGTGGGGAAAAGCCTCGAAGATATGGGCACAG
GGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTATGATCGAGA
ATCGACAAATGGGACCTCATAAAATTACAAAGTTTCTGTAAGGCAAAAGA
CACCGTCATTAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTA
CCTATCCTAAATCAGATAGGGGACTAATATTCAATATATATATAAAGAAC
TCAAGAAGGTGGACTCCAAAAATCAAATAACCCCATTAAAAATGGGGTGC
AGAGCTTAACAAAGAATTCTCACCTGAGGAATATCGAATGGCTGAGAAGC
ACGTGAAAAAAATGTTCAGTATCATTAATCATCAGGGAAATGCTAATCAA
AACAACCCTGAGATTCCCCCTCTCACCAGTCAGAATGTCTAAGGTCCAAA
TCTTATGTGACCGCATATGCCTTGTCATAACGGGTGCTAACTAGTAATAC
TCTCCTCTTGCTGGGTGGTATTCCTAGCTCTCGTATTTCTCTCGTGTCCT
TTCTTTCGGCTACTTTCTCCTTTTCTTTTCCCTATTCCTCTTCCTCTTCT
CATCCCTTTTTCTCTTCTTTCTTTTTTTTTTTTCCTTATTCTTCCTCTCA
TCTCCTCCTTTCTTTCTTTTTCCTTTTCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_l01.b1 MSMg01no430_l01.b1 CHROMAT_FILE:
MSMg01no430_l01.b1 PHD_FILE: MSMg01no430_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:40 2005
         (287 letters)



>mm_chr19_27139149_27139835
          Length = 687

 Score =  485 bits (251), Expect = e-141
 Identities = 278/287 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttgcagagctcgcaggtctgcatacatcagtcatatctgctcaccttgttgcttcacc 60
           ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 487 tcttgcagagctcgcaggtctgcatacatcagtcacatctgctcaccttgtttcttcacc 428

                                                                       
Query: 61  tctatagtttaaaatgtgtaggactgtgatttgttacccaaagaaccacttttgaatcag 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tctatagtttaaaatgcgtaggactgtgatttgttacccaaagaaccacttttgaatcag 368

                                                                       
Query: 121 taggtgtttttcctccaagttggttaagggctagaaatagcagactgcaagacattttca 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 367 taggtgtttttcctccaagttggttaaggtctagaaatagcagactgcaggacattttca 308

                                                                       
Query: 181 aaacaaaatatttcttccctttagataagcgtatgaatgtggagaaagagcctgggaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 307 aaacaaaatatttcttccctttagataagcgtatgaatgtggagaaagagcctggaaatc 248

                                                          
Query: 241 cttgtgttggcaaaagtgtgagcgactgtggctgctgctttctgtgg 287
           ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cttgtcttagcaaaagtgtgagcgactgtggctgctgctttctgtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)