BAC Information

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BAC

Clone NameMSMg01-431D20
Chromosome19 (Build37)
Map Location 26,461,050 - 26,663,085
singlet/doubletdoublet
Overlap gene1700048O14Rik, LOC100041846, LOC100041857
Upstream geneAnkrd15, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806
Downstream geneSmarca2, Gm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431D20.T7 (MSMg01no431_d20.b1)MSMg01-431D20.TJ (MSMg01no431_d20.g1)
ACCAG523544AG523545
length794785
length of high quality
(start - end)		454 (58 - 511)249 (68 - 316)
definitionCHROMAT_FILE: MSMg01no431_d20.b1 PHD_FILE: MSMg01no431_d20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:27 2005CHROMAT_FILE: MSMg01no431_d20.g1 PHD_FILE: MSMg01no431_d20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,662,689 - 26,663,085)(26,461,050 - 26,461,296)
sequence
GCCGCTAAACGACTCCTATAGTTCGNAAATCCGCGGAATTCATTTCATCT
TCTCTAACAATCTTGTCAGCAAGGCACCCGTAGAAGCCACCTGCTAGATT
TCCAGGGATTTTTGTGAACCTGATGTAGTTTGAAATCAGTTGTTCTGGGA
ATATTCACATCATAGACATCAACATATGCTACAAGCCCGTCTGGTGGTGC
ACACCTTTAGGTCAGGCACTGGGGAGGCAGAGGCAGGAAGATCTCTATGA
GTTTGAAGTCAGGCTGTTTTACCCAGTGAGTTCCAGGTCAACCAAGGCTC
TCAAAAACAAATATAAAGACATATGCTACAAGCTGGAGATTTTGAGGGAA
AGAGCTGGTTGGTAGTTATGTTCTAAGATTCCAGGGACAGTCATTCCTTT
TCCAGAGTAGTAGAAAACAGAGCATAGAAAAGTTGAATAACTTGACTGTG
GTCAAGCAAGAAGTCATTCCTAGAGATAAAACTACATCTCAGGACAATAC
GAATTGGAAACATAATAAGCCTTTTGGCCATCATGCTTTGCATTTATGAA
AACTAAAGTGCCCTGATAAAGCCCGGGGTCACATTTTGGAACTTTTTACT
GCCTACAGCTGAGAACTCCCACATCCTGTGACAAATCCTACAGCTTGAAA
TTGCTTCCCCTTGGGCTCCCCCGGGGAAAAGGGGAAAAAACGGGTTGGAA
AAAGTTAAAAATAAGCGGGGTGCCTTTTCCTCCCTCCCCTTTGTGTTCCT
TTTTTTACCACCCTTTTCCCCCCCTTTCTCCTTGGGTTTCCCCC

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTAGATGGATGGGAAATAGATGAAGATGATTC
ATTTAAGCTTTTAAATGATGCACAGGACTGTGTGCCACTCCTACAGGACA
ATAGCACTCCTTCAAAGCAGATACCTCCATGTCCAATACTACCCTCTCCA
TGAAGACCCAAATCCGTGGTCCATGAGAAAGCACATTGAAATTACCCAAT
GCCTAGGTCTTCATCATTCTCTCCTTATTCTGGGTTGAGGGGATGAGAGA
GATTTGGTGAAGAATCTTTTTTTATCTTTCCTCAAAGGGATAATAATAAA
GGAATACTCCAAGAGACACATCTGGCCTTCCTTCCGTTTGACAGTTACAT
ACCAGTTAGGCCCCGGTCATCTCCCTGCAGCCTCCTCGGAGGTGAGTATT
GTTTACAGTTAGCCTGGCCACCACAGATAAAGAGGCCTAGGCACTCTTCT
GAGTTTCTTATGGAAAATCACCTTCCTTCTCCTTTCTGTTCCTGGGTTCC
CTTCTTTAATAGAACGGATCTCGGCAATATACCTCCCCTAATTTTTTTCT
CGACCTTGATTTCCCTTTGCTGAAAATATAGCGTCTTCTCCTTTCACTTC
CATCTACTCAAATTGCTCTTTTACCCCTTTTTGTTCCTTGTCTATTTTAT
ACTCCGTCCCCCTCTTTCCTCCTCCCCTTACTTGTTTCTTTCGAGGCCCT
TTTTTTTGGCTTTCTTTCCTCTCTTTTCCCTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_d20.b1 MSMg01no431_d20.b1 CHROMAT_FILE:
MSMg01no431_d20.b1 PHD_FILE: MSMg01no431_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:27 2005
         (454 letters)



>mm_chr19_26662232_26663085
          Length = 854

 Score =  690 bits (357), Expect = 0.0
 Identities = 387/397 (97%)
 Strand = Plus / Minus

                                                                       
Query: 56  tgtgaacctgatgtagtttgaaatcagttgttctgggaatattcacatcatagacatcaa 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 tgtgaacctgatgtagtttgaaatcagttgttctgggaatattcacatcatagacatcaa 795

                                                                       
Query: 116 catatgctacaagcccgtctggtggtgcacacctttaggtcaggcactggggaggcagag 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 catatgctacaagcccgtctggtggtgcacacctttaggtcaggcactggggaggcagag 735

                                                                       
Query: 176 gcaggaagatctctatgagtttgaagtcaggctgttttacccagtgagttccaggtcaac 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 734 gcaggaagatctctatgagtttgaagtcaggctgttttacccagtgagttccaagtcaac 675

                                                                       
Query: 236 caaggctctcaaaaacaaatataaagacatatgctacaagctggagattttgagggaaag 295
           ||||||||||||||||||| | ||||||||| |||||| |||||||||||||||||||||
Sbjct: 674 caaggctctcaaaaacaaagagaaagacatacgctacacgctggagattttgagggaaag 615

                                                                       
Query: 296 agctggttggtagttatgttctaagattccagggacagtcattccttttccagagtagta 355
           |||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 614 agctggttggtagttaggttctaagattccagggacagtcgctccttttccagagtagta 555

                                                                       
Query: 356 gaaaacagagcatagaaaagttgaataacttgactgtggtcaagcaagaagtcattccta 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gaaaacagagcatagaaaagttgaataacttgactgtggtcaagcaagaagtcattccta 495

                                                
Query: 416 gagataaaactacatctcaggacaatacgaattggaa 452
           |||||||| ||||||| ||||||||||||||||||||
Sbjct: 494 gagataaagctacatcccaggacaatacgaattggaa 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no431_d20.g1 MSMg01no431_d20.g1 CHROMAT_FILE:
MSMg01no431_d20.g1 PHD_FILE: MSMg01no431_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:27 2005
         (249 letters)



>mm_chr19_26460850_26461498
          Length = 649

 Score =  439 bits (227), Expect = e-128
 Identities = 242/247 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttagatggatgggaaatagatgaagatgattcatttaagcttttaaatgatgcacagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttagatggatgggaaatagatgaagatgattcatttaagcttttaaatgatgcacagga 260

                                                                       
Query: 61  ctgtgtgccactcctacaggacaatagcactccttcaaagcagatacctccatgtccaat 120
           ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtgcgccactcctacaggacaataccactccttcaaagcagatacctccatgtccaat 320

                                                                       
Query: 121 actaccctctccatgaagacccaaatccgtggtccatgagaaagcacattgaaattaccc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 actaccctctccatgaagacccaaatccgtggtccatgagaaagcacattgaaattacgc 380

                                                                       
Query: 181 aatgcctaggtcttcatcattctctccttattctgggttgaggggatgagagagatttgg 240
           ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 381 aatgcctaggtcttcatcattctttctttattctgggttgaggggatgagagagatttgg 440

                  
Query: 241 tgaagaa 247
           |||||||
Sbjct: 441 tgaagaa 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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