BAC Information

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BAC

Clone NameMSMg01-431H08
Chromosome19 (Build37)
Map Location 54,861,098 - 55,052,122
singlet/doubletdoublet
Overlap genenone
Upstream geneRbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2, Adra2a, LOC100043004
Downstream geneGpam, Tectb, Gucy2g, Acsl5, Zdhhc6, Vti1a, LOC100043479, Tcf7l2, Ppnr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431H08.T7 (MSMg01no431_h08.b1)MSMg01-431H08.TJ (MSMg01no431_h08.g1)
ACCAG523712AG523713
length787813
length of high quality
(start - end)		348 (65 - 412)248 (69 - 316)
definitionCHROMAT_FILE: MSMg01no431_h08.b1 PHD_FILE: MSMg01no431_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:46 2005CHROMAT_FILE: MSMg01no431_h08.g1 PHD_FILE: MSMg01no431_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,051,775 - 55,052,122)(54,861,098 - 54,861,345)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGACACCGCGGAATT
CAATGAAATGCCACTTTCTTGCAGCACCAGCACTTAAGGGGGATTCCAGC
TGACTGATGGGAAGGGGAAGGAGCCTTGGGTGTGGCTGCGAGGCATGGAC
TTCTAGAAGGATGGTTTGAAACAAAGAGCTTGTATTGAGCTTGTGATAGA
AGCATTCCTTTTTTTCTCATCTCTGACCAGCTTCTGTGAGGCACTCATTG
ACCTAACATTTCGGATTAACCTGGATATCAGGCTCCTTTTGAAGGTCAAC
CCTAGCTAGAGCTCGTTATTTTTAGGACCACACTTTTCTGAATTAAGTTT
CGCCTGATGAGTTTATCATTTCTTCAAAGGGCTGGGCTGGGTGGCTACGT
TTCCTGGGGAGGACGAATGTGGTGTGGCAGGTTTCAGATCTCTGACGTCT
GTTGTATCTTTTGCCTAGATCCCGCCTCTTTCATCTCAGCTAGCCTCTGT
GTGTGTCTTCCCCTTGCGCCAGCCCTTACATCCTGCCTCTTTTCCTCCCA
ACTTAACCTCCGCCAGTTTCCCTCCCCTTGCCGCTCCCACCTTCCCTTCT
TTTTCTCCTCGAGCACCCTCTTTGTCCTTCTCTTTATCTCCTCCTCTCCT
TTCTAGTTTTTCTTATTTTTCTCCTTATCCTTCCCTTGGGTTTTTCTTCC
CCTTCTCCTCTCTGTTATATCTTCTCCCCCTCCCCCCTCTCTTTTTCCTC
CCCCCTTCTCTCTTCTTTCTCTTTTCACCTTCTTACG

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTGCATGACTTCTATCCTCCTCATCATTTGA
TGCGGGGTGTTAAACAGCCTTGGGATAAGTCCTGAGTCATTGCATGGTTA
AATCATTTTCCCTAACTAAAATGTAGGTTCCTTCAGGACAGGAGCTATGT
CTTCCACCCTGGATGCCACAGATCAGGGAGTAGGGAATTGAGAACTGGAA
GGTAAAGACTGTTTTTTAATAAGTAGGAGTTGAAGTCTTGCTCTGGGAAA
GCCAGGGGAGTTTTATGTTTTTTAGCGTTTGCCATGCTTTCTACCTCTTC
CTTTATCTTCCCTTCCCTATCTTTTCACTCTTCCTCCCCCTTTCGTCTTC
CTTTTCCACTCCCCCCCCCCTTACTTTTTTTCCCGTCCCTCTTTTTCCTT
TTAATACTCTCTCTTTTTCTGTCTTTTTTTTATTCTTCTCTCCTTTTTAT
CTCTTCTCCCACATTCTCCCTTTTCAGATCCCATCTCCTTCCTTCTTCTT
CCTCTTTTTTTTTCTTACTTTCTACCACCAGTGTCTTTCCCCACTACTTC
CCTCCCTTTCTATTTTTATCTGTCCCTTTTTTTCCTCTTTGCTCCTTTTT
CTCCTCTTTTCTCCCTTATTTCTTATCATTTTCTCTCTTGCAATCTCTTC
CTTCTATTTCTCCCACTTCTCATCTTTTTTCCCGCCCCCCTCTCTTTTTT
CTTTTATTTCCTTTCTTTCTCTCTCTGCTTTTTCACCTCTATCTTTCTCT
CTTTTTCTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_h08.b1 MSMg01no431_h08.b1 CHROMAT_FILE:
MSMg01no431_h08.b1 PHD_FILE: MSMg01no431_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:46 2005
         (348 letters)



>mm_chr19_55051575_55052322
          Length = 748

 Score =  588 bits (304), Expect = e-172
 Identities = 337/348 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcttgcagcaccagcacttaagggggattccagctgactgatgggaaggggaaggagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tttcttgcagcaccagcacttaagggggattccagctgactgatgggaaggggaaggagc 489

                                                                       
Query: 61  cttgggtgtggctgcgaggcatggacttctagaaggatggtttgaaacaaagagcttgta 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 488 cttgggtgtggctgcgaggcatggacttctagaaggatggttttaaacaaagagcttgta 429

                                                                       
Query: 121 ttgagcttgtgatagaagcattcctttttttctcatctctgaccagcttctgtgaggcac 180
           ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 428 ttgggcttgtgatagaagcattcctttttttctcatccctgaccagcttctgtgaggcac 369

                                                                       
Query: 181 tcattgacctaacatttcggattaacctggatatcaggctccttttgaaggtcaacccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 368 tcattgacctaacatttcggattaacctggatatcaggctccttttgaaggtcaaaccta 309

                                                                       
Query: 241 gctagagctcgttatttttaggaccacacttttctgaattaagtttcgcctgatgagttt 300
           || ||||||||| | |   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gccagagctcgtgaataagaggaccacacttttctgaattaagtttcgcctgatgagttt 249

                                                           
Query: 301 atcatttcttcaaagggctgggctgggtggctacgtttcctggggagg 348
           ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 atcgtttcttcaaagggctgggctgggtggctacgtttcctggggagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no431_h08.g1 MSMg01no431_h08.g1 CHROMAT_FILE:
MSMg01no431_h08.g1 PHD_FILE: MSMg01no431_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:46 2005
         (248 letters)



>mm_chr19_54860898_54861545
          Length = 648

 Score =  464 bits (240), Expect = e-135
 Identities = 246/248 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgcatgacttctatcctcctcatcatttgatgcggggtgttaaacagccttgggataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgcatgacttctatcctcctcatcatttgatgcggggtgttaaacagccttgggataa 260

                                                                       
Query: 61  gtcctgagtcattgcatggttaaatcattttccctaactaaaatgtaggttccttcagga 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 gtcctgagtcattgcatggttaaatcattttccctaactaaaatgtagcttccttcagga 320

                                                                       
Query: 121 caggagctatgtcttccaccctggatgccacagatcagggagtagggaattgagaactgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggagctatgtcttccaccctggatgccacagatcagggagtagggaattgagaactgg 380

                                                                       
Query: 181 aaggtaaagactgttttttaataagtaggagttgaagtcttgctctgggaaagccagggg 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 aaggtaaagactgttttttaataagtaggagttgaagtcttgccctgggaaagccagggg 440

                   
Query: 241 agttttat 248
           ||||||||
Sbjct: 441 agttttat 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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