Query= MSMg01no431_h22.b1 MSMg01no431_h22.b1 CHROMAT_FILE:
MSMg01no431_h22.b1 PHD_FILE: MSMg01no431_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:49 2005
(432 letters)
>mm_chr19_43229911_43230742
Length = 832
Score = 739 bits (382), Expect = 0.0
Identities = 410/426 (96%), Gaps = 11/426 (2%)
Strand = Plus / Plus
Query: 7 gaattctcaacttatatcatcacagtctcctctttgagccccagaggcacaagcaattca 66
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctcaacttaaataatcacagtctcctctttgagccccagaggcacaagcaattca 266
Query: 67 ggcagacagcatagactcctcttgagtacagcggtcatctccctctcaagagaatttgcc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ggcagacagcatagactcctcttgagtacagcggtcatctccctctcaagagaatttgcc 326
Query: 127 tttcctgctgctcacagcttcatccagctgccagtagaatatttggatgacattttctga 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tttcctgctgctcacagcttcatccagctgccagtagaatatttggatgacattttctga 386
Query: 187 cagtcaacacataggaattctggtcaagggaggtgatctggcacagcagctcagcatgta 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cagtcaacacataggaattctggtcaagggaggtgatctggcacagcagctcagcatgta 446
Query: 247 agctctgcgctcctacatgcgtccttctaaaccaggcttcattagggtacgccgtgagtg 306
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 447 agctctgcgctcctacatgcgtccttctaaaccaggctccattagggttcgccgtgagtg 506
Query: 307 accaggggtattgttttgttttttttttttcctccttcttaatctcagccgccttagctg 366
|||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 507 accaggggtatt-----------tttttttcctccttcttaatctcagcccccttagctg 555
Query: 367 taaattggaatctgttttgtgcttgttgaaagggttaaagggactaaggttggttataca 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 taaattggaatctgttttgtgcttgttgaaagggttaaagggactaaggttggttataca 615
Query: 427 ctcagc 432
||||||
Sbjct: 616 ctcagc 621
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space: 348129
Effective search space used: 348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no431_h22.g1 MSMg01no431_h22.g1 CHROMAT_FILE:
MSMg01no431_h22.g1 PHD_FILE: MSMg01no431_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:49 2005
(418 letters)
>mm_chr19_43386103_43386920
Length = 818
Score = 735 bits (380), Expect = 0.0
Identities = 405/418 (96%), Gaps = 8/418 (1%)
Strand = Plus / Minus
Query: 1 cacagcatggcatgcagcaaacaaagaattaggatggtgggggaaatatgtcttctgaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 cacagcatggcatgcagcaaacaaagaattaggatggtgggggaaatatgtcttctgaga 706
Query: 61 gcatttcattgacctactttttccaactttttcccacctcttacgttgtagtatttctca 120
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 705 gcatttcattgacctactttttccaacatgaccccacctcttacgttgtagtatttctca 646
Query: 121 ccagtgctaccatataatcagttcatcagaggattagttcattagttcattcaagagccc 180
||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 645 ccagtgctaccatataatcagttcatc--------agttcattagttcattcaagagccc 594
Query: 181 ttatgattctttctcttccccagagtccatcagctggcaatcaagccatgagcacactat 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 593 ttatgattctttctcttccccagagtctatcagctggcaatcaagccatgagcacactat 534
Query: 241 ccttttaaagtcttccaagattcaagctataacaactttcaacttatcctgtggcccact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ccttttaaagtcttccaagattcaagctataacaactttcaacttatcctgtggcccact 474
Query: 301 gtctttgttacaagttttaccgtttacattatgtcttaaggaatcctgggtctaattttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gtctttgttacaagttttaccgtttacattatgtcttaaggaatcctgggtctaattttg 414
Query: 361 tgttttattggccactatgtgtagctattattacttctgtaatcttcttttttgacac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgttttattggccactatgtgtagctattattacttctgtaatcttcttttttgacac 356
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space: 330881
Effective search space used: 330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
