BAC Information

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BAC

Clone NameMSMg01-432F23
Chromosome19 (Build37)
Map Location 32,069,845 - 32,239,196
singlet/doubletdoublet
Overlap geneAsah2, EG668042, Sgms1
Upstream genePrkg1, Cstf2t, 8430431K14Rik, 1810073H04Rik
Downstream gene2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1, Papss2, Atad1, Pten, B430203M17Rik, 6530404N21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432F23.T7 (MSMg01no432_f23.b1)MSMg01-432F23.TJ (MSMg01no432_f23.g1)
ACCAG524406AG524407
length779764
length of high quality
(start - end)		395 (48 - 442)344 (78 - 421)
definitionCHROMAT_FILE: MSMg01no432_f23.b1 PHD_FILE: MSMg01no432_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:04 2005CHROMAT_FILE: MSMg01no432_f23.g1 PHD_FILE: MSMg01no432_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,069,845 - 32,070,235)(32,238,853 - 32,239,196)
sequence
NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGGGTTATCGCCTACAAATATAACTTCAACCACTTCTCCCT
GGAAATAAAAACGGCATTGAATTAAATCTAGATTAAGCCTCTCTATTCAG
ATTGGAAGCACTGTCTGCGCTATGTTCCAACACCCTAGATGCTGTACACA
TTCCACACTATTTCATTAAGCGATTCCCTCTAAATTTGTTAAGAATTAGA
TCCAAAGAATTTGACTTTGGCAGTGTACTGGCTAGTTTTGTGTCAACTTG
ACACAGCTGGAGTTATCACAGCGAAAGGAGCTTCAGTTGAGGAAATGCCT
CCATGAGATCCAGCTGTAAGGCATTTTCTCAATTAGTGATCAAGGGGGAA
AGGCCCCTTGTGGGTGGNGCCATCTCTGGGCTGGTAGTCTTGGTTCTATA
AGAGAGCAGGCTGAGCAAGCCAGGGGAAAGAAGCCCAGTAAGAAAATTCC
CCCATGGGCTCTGCATCAGCTTCCTGTTCCTGGAACTGGCTGAATTCCCG
TCCCTGACTTCTTTTTGTGGTAACAACAAACGTGTCAATTGTAACTTTCT
GTTCTTTGTAACGTAGGTTCGTGTGGAATAAAATCTCCTGGTCTATCATT
CGCTTATCCAACCAAATTAACCCCTACTCCATCTTTCTTTTGCTTACCTT
CTTATCTCATTTCTCCCCCTTTTTCTAATATAATCCCGTTTCCTATCACT
CTCAATCACCTCTCTGATTTCTCCATTTA

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAGACCAGTCATCATCTGACTGG
ACTTCAATCTCTAAAAATTATAGATAAATGAGAGTTCCCATACCTCTTCT
GTCTCTCAAATTATGTAATATTTGAAGAGGAAATGTTTATTTCATTTTTA
TTCTTCTGTTATTTCTTCCCTATTTTGTACAATAAATCCAGTAAGCTAGG
CCATGTATTAGTTCAACCTGGCTTTTCTAGATGATGGTGGTTGTTACCCA
AGCCGACCTGTCTTCTAGATCAAGCTGTAAAGATGTTTTGCCTGTCTCCA
TTTGGAACTGCTTCACTACATCTCTATTGAGNGAGCAAGGCCAGGAGAAA
AATGAGTTTCTCGCTTCTGCATCTACAGCCTGGCCCTGGAGTCTCTGAAC
AAAGTTGTTAGTAGGTGCCAAATGAAAAGCTTAACCTCTGGGTACCAGTG
CCCTTTCACAGAAAGTTCCCTTTCTCCAAAGGCTAACTTTCTGAATTAGT
TTCATGGAAAACAGTCGGAGATTTTGTTTTCCGGTTTCCATTCTTTTTCT
AAATTATTGTTCCTGTTCCTTTATTCCTTGATAATTACTTTTCCTTCGTT
TTCCCCTGTTTGTCTTCTATTTCCTCCCCCCTTTTCCCTCTTTTTTTCTT
TTCTTCATTTTTTTAGGCCCTCCCTTCTCTTTCTTTCTTCCATATTCTTT
CCGTTTCACTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_f23.b1 MSMg01no432_f23.b1 CHROMAT_FILE:
MSMg01no432_f23.b1 PHD_FILE: MSMg01no432_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:04 2005
         (395 letters)



>mm_chr19_32069641_32070435
          Length = 795

 Score =  712 bits (368), Expect = 0.0
 Identities = 385/391 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgggttatcgcctacaaatataacttcaaccacttctccctggaaataaaaa 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgggttagcgcctacaaatataacttcaaccacttctccctggaaataaaaa 264

                                                                       
Query: 65  cggcattgaattaaatctagattaagcctctctattcagattggaagcactgtctgcgct 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cggcattgaattaagtctagattaagcctctctattcagattggaagcactgtctgcgct 324

                                                                       
Query: 125 atgttccaacaccctagatgctgtacacattccacactatttcattaagcgattccctct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgttccaacaccctagatgctgtacacattccacactatttcattaagcgattccctct 384

                                                                       
Query: 185 aaatttgttaagaattagatccaaagaatttgactttggcagtgtactggctagttttgt 244
           || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 aagtttgttaagaattagatccaaagaatttgactttggcagtatactggctagttttgt 444

                                                                       
Query: 245 gtcaacttgacacagctggagttatcacagcgaaaggagcttcagttgaggaaatgcctc 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 gtcaacttgacacagctggagttatcacagagaaaggagcttcagttgaggaaatgcctc 504

                                                                       
Query: 305 catgagatccagctgtaaggcattttctcaattagtgatcaagggggaaaggccccttgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catgagatccagctgtaaggcattttctcaattagtgatcaagggggaaaggccccttgt 564

                                          
Query: 365 gggtggngccatctctgggctggtagtcttg 395
           |||||| ||||||||||||||||||||||||
Sbjct: 565 gggtggtgccatctctgggctggtagtcttg 595


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no432_f23.g1 MSMg01no432_f23.g1 CHROMAT_FILE:
MSMg01no432_f23.g1 PHD_FILE: MSMg01no432_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:04 2005
         (344 letters)



>mm_chr19_32238653_32239396
          Length = 744

 Score =  659 bits (341), Expect = 0.0
 Identities = 343/344 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagaccagtcatcatctgactggacttcaatctctaaaaattatagataaatgagagttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tagaccagtcatcatctgactggacttcaatctctaaaaattatagataaatgagagttc 485

                                                                       
Query: 61  ccatacctcttctgtctctcaaattatgtaatatttgaagaggaaatgtttatttcattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ccatacctcttctgtctctcaaattatgtaatatttgaagaggaaatgtttatttcattt 425

                                                                       
Query: 121 ttattcttctgttatttcttccctattttgtacaataaatccagtaagctaggccatgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttattcttctgttatttcttccctattttgtacaataaatccagtaagctaggccatgta 365

                                                                       
Query: 181 ttagttcaacctggcttttctagatgatggtggttgttacccaagccgacctgtcttcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttagttcaacctggcttttctagatgatggtggttgttacccaagccgacctgtcttcta 305

                                                                       
Query: 241 gatcaagctgtaaagatgttttgcctgtctccatttggaactgcttcactacatctctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gatcaagctgtaaagatgttttgcctgtctccatttggaactgcttcactacatctctat 245

                                                       
Query: 301 tgagngagcaaggccaggagaaaaatgagtttctcgcttctgca 344
           |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tgagtgagcaaggccaggagaaaaatgagtttctcgcttctgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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