BAC Information

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BAC

Clone NameMSMg01-433C03
Chromosome19 (Build37)
Map Location 38,133,343 - 38,133,703
singlet/doubletsinglet
Overlap geneCep55
Upstream geneCpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3
Downstream geneGpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433C03.T7 (MSMg01no433_c03.b1)MSMg01-433C03.TJ (MSMg01no433_c03.g1)
ACCAG524986AG524987
length730722
length of high quality
(start - end)
605 (62 - 666)486 (66 - 551)
definitionCHROMAT_FILE: MSMg01no433_c03.b1 PHD_FILE: MSMg01no433_c03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:08 2005CHROMAT_FILE: MSMg01no433_c03.g1 PHD_FILE: MSMg01no433_c03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
GCTTGCTCAACATATACCTCATATGCTTGCCTGGCCTTCTCTTATGTGAT
AACACAGCTTGAAGATCCTTACCAGACATAGTTTGCTTTTGGACTTAGCA
GCTAAATATTTCTCTTTCTCCCTACTCAAATTACTCATAGATAGCACTGT
GTTGTAACAATACAAAAGACTGATATTATATAACAAATTTGTATCAATAA
TATTAATATAACTAAGATAAATGAGCTAGAGAGAATGGCTCAGTGGTTAA
GAGTATTAGCTGTTCTTCCAGAGGATATAAATTCAATTCTCAGCACACAC
ACAGCAGCTCATAACTGTAATGGTAGTTCCAGGAGACTCAACACCCTCAC
ATGTGCATATATGCAGGCAAAACACCAACACCCTCACATGGGCATACATG
CAGGCAAAACACCAATACACATGAAATAAAAATAAGTAAATAAATATTTT
TTAAAAGATAAATTATCAAAAAAATTACATGATGAATGCCAAGCTTATTG
GTTTGTCTTCAATATTTGAAATGTTGAAATAAATGTTACAACACATAATC
ATAGAACTTAAAAGTGGGTGCAAGGGGAATCAGAAATTTAGGCTCATCCT
CAGTTCAAGTTCAAGACCAACCTGTATTACATGAGACCCTACCTGAAAGA
GCAAAACAAAACAAAAACAACCAATAATGT
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAACGCAGGACCTCTGGAAGAGCAGCCAGTGAGCTG
AGCCATCTCTCTAGCCCTAGACTTTTTTTTTTTATAAGGACACTGATGGC
CCAGTTATGAGTGCTCCACCCTTGCAATCTCTTGAAGGTCCCAACTTCCT
AAAATCATTACCTGGGGTATTAACATTTCACTATGTAAATTTTGGTGGGG
CAGCACAGATATTCATTGTATAGTAGCTTATTCCTACCTGTGATGATTTG
ACTGCAAAATTGGTTTTGAGTCCTTAGTTTCGTTGCTTTGGGCACACATC
CAGAAGTAGAATTGCTAGTTGTTTGGTATATCTATATTTAATGTCTTGGG
ATAGTGATGCCCTACTCTCTGCACCCCTTTCTTTCCTTCCTCCTTCTACC
ATTTCGCTCTGTGCTGGGGATTGAACCTGGGCTTTGCACTTGCTAAGAAT
ACACTCCACCACTGAGGTACACCCTGCCCCTACCTGCTTTCTTTAAGTAG
GATTGTGCAGTCAGAACTTGGGGTGGCCTCATTTGAAAGAGCAATGGTTT
TGCATGGCTTGTTTCTTAGAGACAGAATCCTAACTAATTATCCCAGGCTG
GNCTCCTCAACTCTTGAACCTCTGCCTTTGCCTCTTGAGTGCGTGAATTG
TGTCCCTATTTTTGTGTCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_c03.b1 MSMg01no433_c03.b1 CHROMAT_FILE:
MSMg01no433_c03.b1 PHD_FILE: MSMg01no433_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:08 2005
         (605 letters)



>mm_chr19_38133343_38134347
          Length = 1005

 Score =  667 bits (345), Expect = 0.0
 Identities = 357/361 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatacctcatatgcttgcctggccttctcttatgtgataacacagcttgaagatcctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atatacctcatatgcttgcctggccttctcttatgtgataacacagcttgaagatcctta 302

                                                                       
Query: 61  ccagacatagtttgcttttggacttagcagctaaatatttctctttctccctactcaaat 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccagacatactttgcttttggacttagcagctaaatatttctctttctccctactcaaat 242

                                                                       
Query: 121 tactcatagatagcactgtgttgtaacaatacaaaagactgatattatataacaaatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tactcatagatagcactgtgttgtaacaatacaaaagactgatattatataacaaatttg 182

                                                                       
Query: 181 tatcaataatattaatataactaagataaatgagctagagagaatggctcagtggttaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tatcaataatattaatataactaagataaatgagctagagagaatggctcagtggttaag 122

                                                                       
Query: 241 agtattagctgttcttccagaggatataaattcaattctcagcacacacacagcagctca 300
           || |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agcacaagctgttcttccagaggatataaattcaattctcagcacacacacagcagctca 62

                                                                       
Query: 301 taactgtaatggtagttccaggagactcaacaccctcacatgtgcatatatgcaggcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taactgtaatggtagttccaggagactcaacaccctcacatgtgcatatatgcaggcaaa 2

            
Query: 361 a 361
           |
Sbjct: 1   a 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)