BAC Information

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BAC

Clone NameMSMg01-433N11
Chromosome19 (Build37)
Map Location 51,252,700 - 51,307,277
singlet/doubletdoublet
Overlap genenone
Upstream geneSorcs1
Downstream geneLOC100042924, LOC100042928, LOC668536, LOC100042936
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433N11.T7 (MSMg01no433_n11.b1)MSMg01-433N11.TJ (MSMg01no433_n11.g1)
ACCAG525530AG525531
length725735
length of high quality
(start - end)		375 (115 - 489)468 (68 - 535)
definitionCHROMAT_FILE: MSMg01no433_n11.b1 PHD_FILE: MSMg01no433_n11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:03 2005CHROMAT_FILE: MSMg01no433_n11.g1 PHD_FILE: MSMg01no433_n11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,306,903 - 51,307,277)(51,252,700 - 51,253,164)
sequence
XXXXXXXXXXXXXXXXXXXXXXTTTCAAAACGGATCCGCGGAATCTCATC
TTTCGTATTAGGAGACTGATTTCTGAGCTAAAGCTAATAAGGCCAAAAGA
CCCGAGTGTCCTCCAGGCTGTATAAAAACGTACAGATATTGCTGTTGAGA
ACAATCCCACATTGTGTCATGGGCTGAATCAGCCCTCTTTCCCCTTGCAT
TCACTTCTGAGATCCTATTATGATGGAAATAGACTGTGAATGAGCTCCAT
CTGGGCCCAAGCCTGAAAAGCTATTTCATAACCACTTTTAATCTGACTAT
TTATTGTTATAACCTCAAGATAAGTTTCTCAATCTATCTCCTACATAGAA
ATAGAAATTATTAAAAAGAAAAGAATGTATTCCCATATTCCTCTTGCCAT
ATGGAAGCAGAAACTCATGCTTCTTTCTCTTGGATATTTGATAAAGAGGG
TGTGTGTCACTATAATTAAGAATATGTTCTTACCTTTTAGTGTTGCTAAC
AAAAAAAATGATCCAAAAGCTACACATTGGCGACTGACAATCAAACTTGC
ATATAATATGATTAGCAGACTGTTAATATAGCATTAATGCAGTTGCATTC
ATTTCCTTTTATTATACACTGACAGAATCTTTAATGTGGCTCACTTTCAT
GTACTCCCTGTGATAATTGAAAACGTGCCCTATTACTTTCCCCACACCCA
TGTTCCCCGCTCAGTTCCTGGAAAG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTAAAATTAAATCCTTCATAAGAAACTCAACC
AAGCATGTGAGAAAGAAAACTCTACAAAGGAAAGTTTAAAACACTTAAGT
TTTGGAATTTTTGGAAAACAAGTTTTAAAATCTAGACTGTCTACATAAGA
ACAATAAAGTCAGTAAACTATTTTATTAGATAGACGTACAGTTTGTGAAA
CAATTTTAACTATATCTAAATGGTACACTGGAAACCTTATATTTTTGTGG
GTATTTTTTATATTTTATTTTCATCTGTGTGCTTTATTTTGATTGTTTGC
TTGTTTTGTTTTGTTTTTTCTTTCACTGAGGTAAGCTTTTACTCTATAAC
CAAGGGATAGTCCTGGAATTTGTAATTTCTCTATTGCTGCTTCTCAAGAG
CTACACCTGTAGGCACGTATCACTATGTTGCTATAGCAACAAGTTAGAAG
CCACTGATTATTATGGAACAAGCAAAATAAAATGCCTTGGATTTAAATTT
CCAGTTGTGAAATCTGCATAGAATGTATTACCCCAAATTATGTTAACACT
AGTATATATTTTTTTAAAAAAGATACCCATCTGAACTCTTTTTGGGAGAT
CCTGCTCCCAATGCTGAAAGGTCTGAATGGGTAATACCATTGACGTGTGG
GGTTCATGCCCCATCACCTCTTTATCATGATGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_n11.b1 MSMg01no433_n11.b1 CHROMAT_FILE:
MSMg01no433_n11.b1 PHD_FILE: MSMg01no433_n11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:03 2005
         (375 letters)



>mm_chr19_51306703_51307477
          Length = 775

 Score =  687 bits (355), Expect = 0.0
 Identities = 370/375 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggctgtataaaaacgtacagatattgctgttgagaacaatcccacattgtgtcatgggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aggctgtataaaaacgtacagatattgctgttgagaacaatcccacattgtgtcatgggc 516

                                                                       
Query: 61  tgaatcagccctctttccccttgcattcacttctgagatcctattatgatggaaatagac 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tgaattagccctctttccccttgcattcacttctgagatcctattatgatggaaatagac 456

                                                                       
Query: 121 tgtgaatgagctccatctgggcccaagcctgaaaagctatttcataaccacttttaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tgtgaatgagctccatctgggcccaagcctgaaaagctatttcataaccacttttaatct 396

                                                                       
Query: 181 gactatttattgttataacctcaagataagtttctcaatctatctcctacatagaaatag 240
           |||||||||  | ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 395 gactatttaaaggtataacctcaagataagtttctcaaactatctcctacatagaaatag 336

                                                                       
Query: 241 aaattattaaaaagaaaagaatgtattcccatattcctcttgccatatggaagcagaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aaattattaaaaagaaaagaatgtattcccatattcctcttgccatatggaagcagaaac 276

                                                                       
Query: 301 tcatgcttctttctcttggatatttgataaagagggtgtgtgtcactataattaagaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tcatgcttctttctcttggatatttgataaagagggtgtgtgtcactataattaagaata 216

                          
Query: 361 tgttcttacctttta 375
           |||||||||||||||
Sbjct: 215 tgttcttacctttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no433_n11.g1 MSMg01no433_n11.g1 CHROMAT_FILE:
MSMg01no433_n11.g1 PHD_FILE: MSMg01no433_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:03 2005
         (468 letters)



>mm_chr19_51252497_51253364
          Length = 868

 Score =  845 bits (437), Expect = 0.0
 Identities = 458/465 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   aaaattaaatccttcataagaaactcaaccaagcatgtgagaaagaaaactctacaaagg 63
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 204 aaaattaaatccttcataagaaactcaaccaagcatgtgagtaagaaaactctacaaagg 263

                                                                       
Query: 64  aaagtttaaaacacttaagttttggaatttttggaaaacaagttttaaaatctagactgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaagtttaaaacacttaagttttggaatttttggaaaacaagttttaaaatctagactgt 323

                                                                       
Query: 124 ctacataagaacaataaagtcagtaaactattttattagatagacgtacagtttgtgaaa 183
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 324 ctacataagaacaataaagtcagtaaaatattttattagatagacgtacagtttgtgaaa 383

                                                                       
Query: 184 caattttaactatatctaaatggtacactggaaaccttatatttttgtgggtatttttta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caattttaactatatctaaatggtacactggaaaccttatatttttgtgggtatttttta 443

                                                                       
Query: 244 tattttattttcatctgtgtgctttattttgattgtttgcttgttttgttttgttttttc 303
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 tattttattttcatctgtgtgctttattttgcttgtttgcttgttttgttttgttttttc 503

                                                                       
Query: 304 tttcactgaggtaagcttttactctataaccaagggatagtcctggaatttgtaatttct 363
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 504 tttcactgaggtaagcttttactctataaccaggggatagtcctggaatttgtaatttct 563

                                                                       
Query: 364 ctattgctgcttctcaagagctacacctgtaggcacgtatcactatgttgctatagcaac 423
           |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 564 ctattgctgcttctcaagagctacacctgtaggcacataccactatgttgctatagcaac 623

                                                        
Query: 424 aagttagaagccactgattattatggaacaagcaaaataaaatgc 468
           ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 624 aagttagaagctactgattattatggaacaagcaaaataaaatgc 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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